TAfinder detailed results

Overview

Job ID wrVbGpMxFf
Sequence name NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome
Predicted type I

Toxin (Protein)


Predicted family ldrD (T6326) Predicted domain Ldr_toxin (Ldr)
Locus tag orf2593 Length 35 a.a.
Coordinates 2737752..2737859 (+)

Antitoxin (RNA)


Predicted family rdlD (AT6347) Predicted domain -
Locus tag NuclAT_17 Length 68 bp
Coordinates 2737637..2737704 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
orf2588 2732919..2734313 - 1395 ORF2588 Predicted ORF by PRODIGAL Version 1.20 -
orf2589 2734498..2734851 + 354 ORF2589 Predicted ORF by PRODIGAL Version 1.20 -
orf2590 2734891..2735610 - 720 ORF2590 Predicted ORF by PRODIGAL Version 1.20 -
orf2591 2735747..2735977 - 231 ORF2591 Predicted ORF by PRODIGAL Version 1.20 -
orf2592 2736247..2737347 + 1101 ORF2592 Predicted ORF by PRODIGAL Version 1.20 -
- 2737637..2737704 - 207 - - Antitoxin
orf2593 2737752..2737859 + 108 ORF2593 Predicted ORF by PRODIGAL Version 1.20 Toxin
orf2594 2738288..2738395 + 108 ORF2594 Predicted ORF by PRODIGAL Version 1.20 -
orf2595 2738823..2738930 + 108 ORF2595 Predicted ORF by PRODIGAL Version 1.20 -
orf2596 2739079..2739933 - 855 ORF2596 Predicted ORF by PRODIGAL Version 1.20 -
orf2597 2739969..2740778 - 810 ORF2597 Predicted ORF by PRODIGAL Version 1.20 -
orf2598 2740782..2741174 - 393 ORF2598 Predicted ORF by PRODIGAL Version 1.20 -
orf2599 2741171..2742004 - 834 ORF2599 Predicted ORF by PRODIGAL Version 1.20 -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin

Ldr_toxin (Ldr) (E-value: 2.1e-26, Score:89.8)

(1-35)


Sequences

Toxin        


Download         Length: 35 a.a.        Molecular weight: 4001.77 Da        Isoelectric Point: 11.4779

>ORF2593 TA_20 Toxin
MTLAQFAMTFWHDLAAPILAGIITAAIVSWWRNRK

Download         Length: 108 bp

>ORF2593 TA_20 Toxin
ATGACGCTCGCGCAGTTTGCCATGACTTTCTGGCACGACCTGGCAGCACCGATCCTGGCG
GGGATTATTACCGCAGCGATTGTCAGCTGGTGGCGTAACCGGAAGTAA

Antitoxin


Download         Length: 68 bp

>NuclAT_17 TA_20 Antitoxin
AGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAAAACGGGGGCTAATCTTGA
AACCAGAC

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
T6326 Escherichia coli str. K-12 substr. MC4100

97.143

100

0.971
T6346 Escherichia coli K-12 strain ER3413

97.143

100

0.971
T6338 Escherichia coli str. K-12 substr. MDS42

97.143

100

0.971
T6334 Escherichia coli str. K-12 substr. DH10B

97.143

100

0.971
T6342 Escherichia coli str. K-12 substr. W3110

97.143

100

0.971
T6330 Escherichia coli str. K-12 substr. MG1655

97.143

100

0.971
T6327 Escherichia coli str. K-12 substr. MC4100

97.143

100

0.971
T6325 Escherichia coli str. K-12 substr. MC4100

97.143

100

0.971
T6347 Escherichia coli K-12 strain ER3413

97.143

100

0.971
T6345 Escherichia coli K-12 strain ER3413

97.143

100

0.971
T6339 Escherichia coli str. K-12 substr. MDS42

97.143

100

0.971
T6337 Escherichia coli str. K-12 substr. MDS42

97.143

100

0.971
T6335 Escherichia coli str. K-12 substr. DH10B

97.143

100

0.971
T6333 Escherichia coli str. K-12 substr. DH10B

97.143

100

0.971
T6343 Escherichia coli str. K-12 substr. W3110

97.143

100

0.971
T6341 Escherichia coli str. K-12 substr. W3110

97.143

100

0.971
T6331 Escherichia coli str. K-12 substr. MG1655

97.143

100

0.971
T6329 Escherichia coli str. K-12 substr. MG1655

97.143

100

0.971
T6328 Escherichia coli str. K-12 substr. MC4100

57.143

100

0.571
T6348 Escherichia coli K-12 strain ER3413

57.143

100

0.571
T6340 Escherichia coli str. K-12 substr. MDS42

57.143

100

0.571
T6336 Escherichia coli str. K-12 substr. DH10B

57.143

100

0.571
T6344 Escherichia coli str. K-12 substr. W3110

57.143

100

0.571
T6332 Escherichia coli str. K-12 substr. MG1655

57.143

100

0.571
Protein Organism Identities (%) Coverage (%) Ha-value