Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS13921  |
| T6SS type | Type i2 |
| Strain | Enterobacter sp. DSM 30060 |
| Replicon (RefSeq) | chromosome (NZ_CP056118) |
| Location | 3706029..3730164 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| HWQ15_RS17610 | 3702053..3702193 | - | 141 | WP_003857665.1 | hypothetical protein | ||
| HWQ15_RS17615 | 3702319..3703101 | + | 783 | WP_046620247.1 | MBL fold metallo-hydrolase | ||
| HWQ15_RS17620 | 3703174..3703809 | + | 636 | WP_022647889.1 | carbonic anhydrase | ||
| HWQ15_RS17625 | 3703838..3705433 | - | 1596 | WP_045309088.1 | FAD-NAD(P)-binding protein | ||
| T6CP207841 | TssB | HWQ15_RS17630 (tssB) | 3706029..3706520 | + | 492 | WP_023300236.1 | type VI secretion system contractile sheath small subunit |
| T6CP207842 | TssC | HWQ15_RS17635 (tssC) | 3706561..3708096 | + | 1536 | WP_063945638.1 | type VI secretion system contractile sheath large subunit |
| T6CP207843 | TssK | HWQ15_RS17640 (tssK) | 3708110..3709450 | + | 1341 | WP_063149701.1 | type VI secretion system baseplate subunit TssK |
| T6CP207844 | TssL | HWQ15_RS17645 | 3709447..3710100 | + | 654 | WP_063149702.1 | type VI secretion system protein TssL, short form |
| HWQ15_RS17650 | 3710104..3711810 | + | 1707 | WP_063149703.1 | OmpA family protein | ||
| T6CP207846 | TssD | HWQ15_RS17655 | 3711816..3712307 | + | 492 | WP_009653685.1 | type VI secretion system effector Hcp |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||