Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS13921  |
| T6SS type | Type i2 |
| Strain | Enterobacter sp. DSM 30060 |
| Replicon (RefSeq) | chromosome (NZ_CP056118) |
| Location | 3706029..3730164 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| HWQ15_RS17610 | 3702053..3702193 | - | 141 | WP_003857665.1 | hypothetical protein | ||
| HWQ15_RS17615 | 3702319..3703101 | + | 783 | WP_046620247.1 | MBL fold metallo-hydrolase | ||
| HWQ15_RS17620 | 3703174..3703809 | + | 636 | WP_022647889.1 | carbonic anhydrase | ||
| HWQ15_RS17625 | 3703838..3705433 | - | 1596 | WP_045309088.1 | FAD-NAD(P)-binding protein | ||
| T6CP207841 | TssB | HWQ15_RS17630 (tssB) | 3706029..3706520 | + | 492 | WP_023300236.1 | type VI secretion system contractile sheath small subunit |
| T6CP207842 | TssC | HWQ15_RS17635 (tssC) | 3706561..3708096 | + | 1536 | WP_063945638.1 | type VI secretion system contractile sheath large subunit |
| T6CP207843 | TssK | HWQ15_RS17640 (tssK) | 3708110..3709450 | + | 1341 | WP_063149701.1 | type VI secretion system baseplate subunit TssK |
| T6CP207844 | TssL | HWQ15_RS17645 | 3709447..3710100 | + | 654 | WP_063149702.1 | type VI secretion system protein TssL, short form |
| HWQ15_RS17650 | 3710104..3711810 | + | 1707 | WP_063149703.1 | OmpA family protein | ||
| T6CP207846 | TssD | HWQ15_RS17655 | 3711816..3712307 | + | 492 | WP_009653685.1 | type VI secretion system effector Hcp |
| T6CP207847 | TssH | HWQ15_RS17660 | 3712480..3712737 | + | 258 | WP_038415927.1 | hypothetical protein |
| T6CP207848 | TssI | HWQ15_RS17665 | 3712737..3713294 | + | 558 | WP_063216535.1 | hypothetical protein |
| HWQ15_RS17670 | 3713288..3713830 | + | 543 | WP_063149309.1 | hypothetical protein | ||
| T6CP207849 | TssI | HWQ15_RS17675 (vgrG) | 3713817..3716339 | + | 2523 | WP_063149310.1 | type VI secretion system tip protein VgrG |
| HWQ15_RS17680 | 3716357..3718591 | + | 2235 | WP_063149311.1 | hypothetical protein | ||
| HWQ15_RS17685 | 3718603..3719568 | + | 966 | WP_063149312.1 | SUMF1/EgtB/PvdO family nonheme iron enzyme | ||
| HWQ15_RS17690 | 3719608..3720577 | + | 970 | pseudogene | SUMF1/EgtB/PvdO family nonheme iron enzyme | ||
| T6CP207850 | PAAR | HWQ15_RS17695 | 3720674..3720931 | + | 258 | WP_074143628.1 | PAAR domain-containing protein |
| HWQ15_RS17700 | 3720935..3722119 | + | 1185 | WP_063149314.1 | hypothetical protein | ||
| HWQ15_RS17705 | 3722450..3725373 | + | 2924 | pseudogene | type VI secretion protein VasK | ||
| HWQ15_RS17710 | 3725649..3725936 | + | 288 | WP_139153402.1 | hypothetical protein | ||
| HWQ15_RS17715 | 3725878..3726390 | + | 513 | WP_139153403.1 | hypothetical protein | ||
| T6CP207851 | TssF | HWQ15_RS17720 (tssF) | 3726404..3728167 | + | 1764 | WP_063149317.1 | type VI secretion system baseplate subunit TssF |
| T6CP207852 | TssG | HWQ15_RS17725 (tssG) | 3728122..3729216 | + | 1095 | WP_074143609.1 | type VI secretion system baseplate subunit TssG |
| T6CP207853 | TssJ | HWQ15_RS17730 (tssJ) | 3729197..3729721 | + | 525 | WP_176587439.1 | type VI secretion system lipoprotein TssJ |
| T6CP207854 | TssE | HWQ15_RS17735 (tssE) | 3729721..3730164 | + | 444 | WP_038417027.1 | type VI secretion system baseplate subunit TssE |
| HWQ15_RS17740 | 3730499..3730894 | + | 396 | WP_063928376.1 | hypothetical protein | ||
| HWQ15_RS17745 | 3730967..3731098 | + | 132 | pseudogene | glycogen synthesis protein GlgS | ||
| HWQ15_RS17750 | 3731271..3731741 | + | 471 | WP_026080712.1 | Hsp20 family protein | ||
| HWQ15_RS17765 (mdtK) | 3732357..3733730 | - | 1374 | WP_032622176.1 | MdtK family multidrug efflux MATE transporter | ||
| HWQ15_RS17770 | 3733956..3734597 | + | 642 | WP_063216403.1 | riboflavin synthase |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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