Detailed information of component protein


Summary

Component ID T6CP207843
Component protein type TssK
T6SS ID (Type) T6SS13921 insolico (Type i2)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (447 a.a.); Nucleotide sequence (1341 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS17640
Coordinate (Strand) 3708110..3709450 (+)
NCBI ID WP_063149701.1
RefSeq NZ_CP056118
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 3.5e-132 18..443
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-446 MKIYRPLWEDGAFLAPQQFQQQARWDAHVADTVARMALAHPWGVLCAEFDEGALALSRLNATRLCVRFADGTLVDTDLADTLPPVCDLSAAGSDAVEVLLCLPLLSANGGNLDDGQDSARPRRWQSERVTVQELAGHERSELTVLRHALTLRLSTQENSAWLTCPVARLMRNAQGQWVQERSFIPPLLSMSASPLLLSELSDLLHRLAARRKRLMAMRRESNERMADFAVADVSLFWLLNALNSVEPVLTELHQAPSRHPELLYRELARLAGSLLTFSLEHDVDAIPPYRHDAPETVFPPLFTLLDNLLEASLPSRVIAIELKQGEDREIWRGKLHDARLREGADFYLSVRSAMPNHELQTRFPQLCKAGSHDDVSEVVNIALSGMVIKPLSHVPAAIPLRLENQYFALDLSTDAARAMLEAGNCTFYTPGSLGEVKLELFAVLRS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9839 - -


  Protein sequence: 447 a.a.    

>T6CP207843 NZ_CP056118:3708110-3709450 [Enterobacter sp. DSM 30060] [TssK]
MKIYRPLWEDGAFLAPQQFQQQARWDAHVADTVARMALAHPWGVLCAEFDEGALALSRLNATRLCVRFADGTLVDTDLAD
TLPPVCDLSAAGSDAVEVLLCLPLLSANGGNLDDGQDSARPRRWQSERVTVQELAGHERSELTVLRHALTLRLSTQENSA
WLTCPVARLMRNAQGQWVQERSFIPPLLSMSASPLLLSELSDLLHRLAARRKRLMAMRRESNERMADFAVADVSLFWLLN
ALNSVEPVLTELHQAPSRHPELLYRELARLAGSLLTFSLEHDVDAIPPYRHDAPETVFPPLFTLLDNLLEASLPSRVIAI
ELKQGEDREIWRGKLHDARLREGADFYLSVRSAMPNHELQTRFPQLCKAGSHDDVSEVVNIALSGMVIKPLSHVPAAIPL
RLENQYFALDLSTDAARAMLEAGNCTFYTPGSLGEVKLELFAVLRS*

  Nucleotide sequence: 1341 bp    

>T6CP207843 NZ_CP056118:3708110-3709450 [Enterobacter sp. DSM 30060] [TssK]
ATGAAAATTTATCGTCCGTTATGGGAAGACGGGGCCTTCCTGGCCCCGCAGCAGTTCCAGCAGCAGGCCCGCTGGGATGC
ACATGTGGCCGACACCGTGGCCCGGATGGCGCTGGCGCACCCGTGGGGTGTGCTGTGCGCGGAGTTCGACGAAGGCGCGC
TGGCCCTTTCACGTCTTAATGCCACCCGGCTTTGTGTGCGCTTCGCGGATGGTACCCTGGTGGACACAGATCTGGCGGAT
ACCCTGCCGCCGGTCTGTGATTTATCAGCGGCGGGGAGTGATGCTGTTGAAGTGCTGCTGTGTCTGCCGCTCCTCAGCGC
CAATGGCGGTAATCTGGATGACGGGCAGGACAGTGCCCGTCCGCGCCGCTGGCAGTCTGAACGGGTAACAGTGCAGGAAC
TGGCCGGGCATGAGCGCAGTGAACTGACGGTACTTCGTCATGCCCTGACGCTGCGGCTGTCGACTCAGGAAAACAGCGCC
TGGCTTACCTGCCCGGTGGCGAGACTGATGCGAAACGCACAGGGGCAGTGGGTACAGGAGCGGAGCTTTATTCCGCCGCT
GCTCTCTATGTCTGCCAGCCCGTTACTGCTCAGCGAACTGAGTGACCTGCTGCACCGCCTGGCGGCCCGGCGTAAGCGCC
TGATGGCCATGCGCCGTGAAAGCAACGAGCGGATGGCGGACTTCGCGGTGGCCGATGTATCGCTGTTCTGGTTGCTGAAC
GCCCTCAACAGCGTTGAGCCGGTACTGACGGAGCTGCACCAGGCGCCGTCCCGCCATCCGGAACTGCTGTACCGCGAGCT
GGCCCGCCTTGCCGGCAGCCTGCTGACCTTTTCGCTTGAACATGATGTGGACGCCATTCCCCCCTATCGGCATGACGCGC
CGGAAACGGTGTTCCCGCCGCTGTTTACCTTGCTCGATAACCTGCTTGAAGCCAGTCTGCCGTCGCGCGTGATTGCCATT
GAACTGAAGCAGGGCGAAGACCGTGAGATCTGGCGCGGGAAGCTGCACGACGCGCGGCTGCGTGAAGGGGCCGATTTCTA
TCTCTCCGTGCGCTCCGCCATGCCAAACCACGAACTCCAGACGCGCTTCCCGCAACTGTGTAAGGCGGGAAGTCACGATG
ATGTCTCTGAGGTGGTGAATATCGCCCTGAGCGGGATGGTGATTAAACCACTAAGCCACGTTCCGGCGGCCATCCCGCTG
CGTCTGGAAAATCAGTATTTCGCGCTGGATCTGTCCACCGATGCTGCTCGTGCCATGCTGGAAGCCGGAAACTGTACCTT
CTATACGCCGGGCTCCCTCGGTGAGGTGAAACTTGAACTGTTTGCGGTGCTGCGCTCATGA