Detailed information of component protein


Summary

Component ID T6CP207846
Component protein type TssD
T6SS ID (Type) T6SS13921 insolico (Type i2)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (164 a.a.); Nucleotide sequence (492 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS17655
Coordinate (Strand) 3711816..3712307 (+)
NCBI ID WP_009653685.1
RefSeq NZ_CP056118
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
T6SS_HCPPF05638.143.5e-376..146
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-163MAIPVYLWLKDDGGADIKGSVDVQDREGSIEVVAQEHNLYIPTDNNTGKLTGTRIHTPFLFTKEIDSSSPYLYKAVTTGQTLKSAEFKWYRINDAGQEVEYFNTKLENVKLVKVNPKMHDIKDPAFEKHNHLEQIELRYEKITWTYKDGNIIHSDSWNERATA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9879--


  Protein sequence: 164 a.a.    

>T6CP207846 NZ_CP056118:c4314141-4313650 [Enterobacter sp. DSM 30060] [TssD]
MAIPVYLWLKDDGGADIKGSVDVQDREGSIEVVAQEHNLYIPTDNNTGKLTGTRIHTPFLFTKEIDSSSPYLYKAVTTGQ
TLKSAEFKWYRINDAGQEVEYFNTKLENVKLVKVNPKMHDIKDPAFEKHNHLEQIELRYEKITWTYKDGNIIHSDSWNER
ATA*

  Nucleotide sequence: 492 bp    

>T6CP207846 NZ_CP056118:c4314141-4313650 [Enterobacter sp. DSM 30060] [TssD]
ATGGCAATACCAGTCTATCTGTGGCTGAAGGACGACGGCGGCGCGGACATCAAAGGGTCTGTGGACGTTCAGGATCGTGA
AGGCAGCATCGAGGTGGTGGCCCAGGAGCACAACCTGTACATCCCGACCGACAATAACACCGGCAAGCTGACCGGTACCC
GTATCCACACCCCGTTCCTGTTCACCAAGGAAATCGATTCGTCCAGCCCGTACCTGTACAAGGCGGTGACCACCGGCCAG
ACCCTGAAGTCTGCGGAATTTAAGTGGTACAGAATCAATGACGCGGGCCAGGAAGTGGAGTACTTCAACACGAAGCTTGA
GAACGTGAAGCTGGTGAAAGTGAATCCGAAGATGCACGACATCAAGGATCCGGCGTTCGAGAAGCACAACCACCTCGAGC
AGATTGAACTGCGCTACGAAAAAATCACCTGGACCTACAAGGACGGCAACATCATTCATTCCGATTCCTGGAACGAACGC
GCCACCGCGTAA