Detailed information of component protein
Summary
| Component ID | T6CP207854 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS13921  (Type i2) |
| Strain | Enterobacter sp. DSM 30060 |
| Replicon | chromosome |
| Sequence | Protein sequence (148 a.a.); Nucleotide sequence (444 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | HWQ15_RS17735 |
| Coordinate (Strand) | 3729721..3730164 (+) |
| NCBI ID | WP_038417027.1 |
| RefSeq | NZ_CP056118 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 7.2e-12 | 30..113 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-147 | MPRPSLYDMLYGNFAGGLDLHSVSEENQLIMSVLDNMQRILNCRAGTLTHLPDYGLPDMTKILQGMPGTAHQLITTLSAVLLKYEPRLSRINVVMQEQIQPGELRYAIDAELKGVGLVRYGTEFMPEGRVLIRHLKQQQYLDNTARV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9842 | - | - |
Protein sequence: 148 a.a.
>T6CP207854 NZ_CP056118:3729721-3730164 [Enterobacter sp. DSM 30060] [TssE]
MPRPSLYDMLYGNFAGGLDLHSVSEENQLIMSVLDNMQRILNCRAGTLTHLPDYGLPDMTKILQGMPGTAHQLITTLSAV
LLKYEPRLSRINVVMQEQIQPGELRYAIDAELKGVGLVRYGTEFMPEGRVLIRHLKQQQYLDNTARV*
MPRPSLYDMLYGNFAGGLDLHSVSEENQLIMSVLDNMQRILNCRAGTLTHLPDYGLPDMTKILQGMPGTAHQLITTLSAV
LLKYEPRLSRINVVMQEQIQPGELRYAIDAELKGVGLVRYGTEFMPEGRVLIRHLKQQQYLDNTARV*
Nucleotide sequence: 444 bp
>T6CP207854 NZ_CP056118:3729721-3730164 [Enterobacter sp. DSM 30060] [TssE]
ATGCCGCGTCCGTCCCTGTATGACATGCTGTACGGCAACTTCGCCGGCGGGCTTGACCTGCACAGCGTAAGCGAGGAGAA
CCAGCTGATTATGTCGGTGCTGGATAACATGCAGCGTATCCTCAACTGTCGCGCCGGTACGCTGACCCACCTGCCGGACT
ACGGCCTGCCGGATATGACAAAAATCCTCCAGGGAATGCCCGGGACCGCCCACCAGCTGATTACCACACTGTCGGCCGTG
CTGCTGAAATATGAGCCGCGCCTGAGCCGGATTAACGTGGTGATGCAGGAACAGATTCAGCCCGGAGAACTCCGCTACGC
CATTGATGCGGAGCTGAAGGGGGTGGGGCTGGTGCGCTACGGCACGGAATTTATGCCCGAGGGCAGGGTATTAATCCGTC
ATCTGAAACAACAGCAGTATCTGGATAATACCGCCAGAGTGTGA
ATGCCGCGTCCGTCCCTGTATGACATGCTGTACGGCAACTTCGCCGGCGGGCTTGACCTGCACAGCGTAAGCGAGGAGAA
CCAGCTGATTATGTCGGTGCTGGATAACATGCAGCGTATCCTCAACTGTCGCGCCGGTACGCTGACCCACCTGCCGGACT
ACGGCCTGCCGGATATGACAAAAATCCTCCAGGGAATGCCCGGGACCGCCCACCAGCTGATTACCACACTGTCGGCCGTG
CTGCTGAAATATGAGCCGCGCCTGAGCCGGATTAACGTGGTGATGCAGGAACAGATTCAGCCCGGAGAACTCCGCTACGC
CATTGATGCGGAGCTGAAGGGGGTGGGGCTGGTGCGCTACGGCACGGAATTTATGCCCGAGGGCAGGGTATTAATCCGTC
ATCTGAAACAACAGCAGTATCTGGATAATACCGCCAGAGTGTGA