Detailed information of component protein
Summary
| Component ID | T6CP207844 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS13921  (Type i2) |
| Strain | Enterobacter sp. DSM 30060 |
| Replicon | chromosome |
| Sequence | Protein sequence (218 a.a.); Nucleotide sequence (654 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | HWQ15_RS17645 |
| Coordinate (Strand) | 3709447..3710100 (+) |
| NCBI ID | WP_063149702.1 |
| RefSeq | NZ_CP056118 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 2.9e-39 | 12..203 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-183 | MNDADIDLINKTFYPGWLMVSQLRSGQEVKDGEALYRRACRWVNAARESLNEAGFSTTSCDHMLYAYCALMDESVLNRDKQDDGYRQWRKDPLQARFFRTLNAGEELWERIRTALREPAPDVAVLTCLYRTLQLGFTGQYRTQDDERREDVVRALSERVPPFALTQETPVVVRASRLRSGRRM |
| Transmembrane helix | 184-206 | YWLGWVAGVVVLAALWFTFSSVL |
| Outside | 207-217 | SQMVAQIAGQG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9904 | - | - |
Protein sequence: 218 a.a.
>T6CP207844 NZ_CP056118:3709447-3710100 [Enterobacter sp. DSM 30060] [TssL]
MNDADIDLINKTFYPGWLMVSQLRSGQEVKDGEALYRRACRWVNAARESLNEAGFSTTSCDHMLYAYCALMDESVLNRDK
QDDGYRQWRKDPLQARFFRTLNAGEELWERIRTALREPAPDVAVLTCLYRTLQLGFTGQYRTQDDERREDVVRALSERVP
PFALTQETPVVVRASRLRSGRRMYWLGWVAGVVVLAALWFTFSSVLSQMVAQIAGQG*
MNDADIDLINKTFYPGWLMVSQLRSGQEVKDGEALYRRACRWVNAARESLNEAGFSTTSCDHMLYAYCALMDESVLNRDK
QDDGYRQWRKDPLQARFFRTLNAGEELWERIRTALREPAPDVAVLTCLYRTLQLGFTGQYRTQDDERREDVVRALSERVP
PFALTQETPVVVRASRLRSGRRMYWLGWVAGVVVLAALWFTFSSVLSQMVAQIAGQG*
Nucleotide sequence: 654 bp
>T6CP207844 NZ_CP056118:3709447-3710100 [Enterobacter sp. DSM 30060] [TssL]
ATGAACGATGCCGACATTGACCTGATAAACAAAACGTTTTATCCGGGCTGGCTGATGGTCAGCCAGTTGCGCAGCGGCCA
GGAGGTAAAGGACGGCGAAGCGCTGTACCGACGGGCCTGCCGATGGGTGAACGCCGCGCGAGAATCACTGAACGAAGCCG
GGTTCAGCACCACATCCTGCGACCATATGCTGTATGCGTACTGCGCCCTGATGGATGAGAGCGTGCTGAACCGGGATAAA
CAGGATGACGGTTACCGCCAGTGGCGCAAGGACCCACTTCAGGCGCGGTTTTTCCGTACCCTGAATGCAGGGGAAGAGCT
GTGGGAGCGTATCCGTACGGCCCTGCGCGAGCCTGCGCCGGATGTGGCGGTGCTGACCTGCCTGTACCGCACCCTGCAAC
TGGGCTTCACCGGCCAGTACCGCACGCAGGATGATGAGCGGCGTGAGGATGTGGTGCGCGCGCTCAGTGAGCGCGTACCG
CCGTTTGCGCTGACCCAGGAAACTCCGGTGGTGGTCAGGGCATCCCGCCTGCGCAGCGGACGCCGGATGTACTGGCTGGG
CTGGGTGGCGGGCGTGGTGGTGCTGGCGGCGCTGTGGTTCACCTTCTCCTCTGTGCTGTCGCAGATGGTGGCGCAGATTG
CGGGGCAGGGATAA
ATGAACGATGCCGACATTGACCTGATAAACAAAACGTTTTATCCGGGCTGGCTGATGGTCAGCCAGTTGCGCAGCGGCCA
GGAGGTAAAGGACGGCGAAGCGCTGTACCGACGGGCCTGCCGATGGGTGAACGCCGCGCGAGAATCACTGAACGAAGCCG
GGTTCAGCACCACATCCTGCGACCATATGCTGTATGCGTACTGCGCCCTGATGGATGAGAGCGTGCTGAACCGGGATAAA
CAGGATGACGGTTACCGCCAGTGGCGCAAGGACCCACTTCAGGCGCGGTTTTTCCGTACCCTGAATGCAGGGGAAGAGCT
GTGGGAGCGTATCCGTACGGCCCTGCGCGAGCCTGCGCCGGATGTGGCGGTGCTGACCTGCCTGTACCGCACCCTGCAAC
TGGGCTTCACCGGCCAGTACCGCACGCAGGATGATGAGCGGCGTGAGGATGTGGTGCGCGCGCTCAGTGAGCGCGTACCG
CCGTTTGCGCTGACCCAGGAAACTCCGGTGGTGGTCAGGGCATCCCGCCTGCGCAGCGGACGCCGGATGTACTGGCTGGG
CTGGGTGGCGGGCGTGGTGGTGCTGGCGGCGCTGTGGTTCACCTTCTCCTCTGTGCTGTCGCAGATGGTGGCGCAGATTG
CGGGGCAGGGATAA