Detailed information of component protein


Summary

Component ID T6CP207844
Component protein type TssL
T6SS ID (Type) T6SS13921 insolico (Type i2)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (218 a.a.); Nucleotide sequence (654 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS17645
Coordinate (Strand) 3709447..3710100 (+)
NCBI ID WP_063149702.1
RefSeq NZ_CP056118
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
DotUPF09850.112.9e-3912..203
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Inside1-183MNDADIDLINKTFYPGWLMVSQLRSGQEVKDGEALYRRACRWVNAARESLNEAGFSTTSCDHMLYAYCALMDESVLNRDKQDDGYRQWRKDPLQARFFRTLNAGEELWERIRTALREPAPDVAVLTCLYRTLQLGFTGQYRTQDDERREDVVRALSERVPPFALTQETPVVVRASRLRSGRRM
Transmembrane helix184-206YWLGWVAGVVVLAALWFTFSSVL
Outside207-217SQMVAQIAGQG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9904--


  Protein sequence: 218 a.a.    

>T6CP207844 NZ_CP056118:3709447-3710100 [Enterobacter sp. DSM 30060] [TssL]
MNDADIDLINKTFYPGWLMVSQLRSGQEVKDGEALYRRACRWVNAARESLNEAGFSTTSCDHMLYAYCALMDESVLNRDK
QDDGYRQWRKDPLQARFFRTLNAGEELWERIRTALREPAPDVAVLTCLYRTLQLGFTGQYRTQDDERREDVVRALSERVP
PFALTQETPVVVRASRLRSGRRMYWLGWVAGVVVLAALWFTFSSVLSQMVAQIAGQG*

  Nucleotide sequence: 654 bp    

>T6CP207844 NZ_CP056118:3709447-3710100 [Enterobacter sp. DSM 30060] [TssL]
ATGAACGATGCCGACATTGACCTGATAAACAAAACGTTTTATCCGGGCTGGCTGATGGTCAGCCAGTTGCGCAGCGGCCA
GGAGGTAAAGGACGGCGAAGCGCTGTACCGACGGGCCTGCCGATGGGTGAACGCCGCGCGAGAATCACTGAACGAAGCCG
GGTTCAGCACCACATCCTGCGACCATATGCTGTATGCGTACTGCGCCCTGATGGATGAGAGCGTGCTGAACCGGGATAAA
CAGGATGACGGTTACCGCCAGTGGCGCAAGGACCCACTTCAGGCGCGGTTTTTCCGTACCCTGAATGCAGGGGAAGAGCT
GTGGGAGCGTATCCGTACGGCCCTGCGCGAGCCTGCGCCGGATGTGGCGGTGCTGACCTGCCTGTACCGCACCCTGCAAC
TGGGCTTCACCGGCCAGTACCGCACGCAGGATGATGAGCGGCGTGAGGATGTGGTGCGCGCGCTCAGTGAGCGCGTACCG
CCGTTTGCGCTGACCCAGGAAACTCCGGTGGTGGTCAGGGCATCCCGCCTGCGCAGCGGACGCCGGATGTACTGGCTGGG
CTGGGTGGCGGGCGTGGTGGTGCTGGCGGCGCTGTGGTTCACCTTCTCCTCTGTGCTGTCGCAGATGGTGGCGCAGATTG
CGGGGCAGGGATAA