Detailed information of component protein
Summary
| Component ID | T6CP207853 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS13921  (Type i2) |
| Strain | Enterobacter sp. DSM 30060 |
| Replicon | chromosome |
| Sequence | Protein sequence (175 a.a.); Nucleotide sequence (525 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | HWQ15_RS17730 |
| Coordinate (Strand) | 3729197..3729721 (+) |
| NCBI ID | WP_176587439.1 |
| RefSeq | NZ_CP056118 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 2.4e-31 | 43..164 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-174 | MAITAGKTLALTLATLLTGCGLTQKVTDGTVAVTKSIFYRQVKTLHLDIQTREGVNNNAKGASLATVVRIYQLKERKAFDSTDYPSLFASDSQAIKADLVAEKDIRLRPGESVTLDMPMEESAQVVAVAGMFMAPDQVNDTWRITLTRDDLDPDKARVIEVSNNRLTLKPLEGE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| LIPO(Sec/SPII) | 0.9986 | pos: 19-20. LTG-CG. | MAITAGKTLALTLATLLTG |
Protein sequence: 175 a.a.
>T6CP207853 NZ_CP056118:3729197-3729721 [Enterobacter sp. DSM 30060] [TssJ]
MAITAGKTLALTLATLLTGCGLTQKVTDGTVAVTKSIFYRQVKTLHLDIQTREGVNNNAKGASLATVVRIYQLKERKAFD
STDYPSLFASDSQAIKADLVAEKDIRLRPGESVTLDMPMEESAQVVAVAGMFMAPDQVNDTWRITLTRDDLDPDKARVIE
VSNNRLTLKPLEGE*
MAITAGKTLALTLATLLTGCGLTQKVTDGTVAVTKSIFYRQVKTLHLDIQTREGVNNNAKGASLATVVRIYQLKERKAFD
STDYPSLFASDSQAIKADLVAEKDIRLRPGESVTLDMPMEESAQVVAVAGMFMAPDQVNDTWRITLTRDDLDPDKARVIE
VSNNRLTLKPLEGE*
Nucleotide sequence: 525 bp
>T6CP207853 NZ_CP056118:3729197-3729721 [Enterobacter sp. DSM 30060] [TssJ]
ATGGCGATTACCGCTGGTAAGACTCTGGCTCTCACGCTGGCGACCCTGTTAACCGGCTGCGGGCTGACGCAGAAAGTGAC
GGACGGCACCGTCGCCGTCACGAAGTCCATTTTTTACAGACAGGTGAAAACCCTGCATCTGGATATTCAGACGCGCGAAG
GGGTGAACAACAACGCGAAAGGGGCGTCGCTGGCAACGGTGGTGCGTATTTACCAGCTTAAAGAGCGTAAGGCGTTTGAC
AGTACTGATTATCCGTCACTGTTCGCCAGTGACAGTCAGGCTATTAAAGCCGACCTGGTGGCGGAAAAGGATATTCGCCT
GCGCCCTGGCGAATCGGTGACGCTGGATATGCCGATGGAAGAGAGCGCGCAGGTTGTGGCGGTGGCGGGGATGTTTATGG
CACCGGATCAGGTAAACGATACCTGGCGTATTACCCTGACCCGTGACGACCTTGACCCGGATAAGGCGCGGGTTATTGAA
GTCAGTAATAACCGCCTGACGCTGAAACCGCTGGAGGGGGAATGA
ATGGCGATTACCGCTGGTAAGACTCTGGCTCTCACGCTGGCGACCCTGTTAACCGGCTGCGGGCTGACGCAGAAAGTGAC
GGACGGCACCGTCGCCGTCACGAAGTCCATTTTTTACAGACAGGTGAAAACCCTGCATCTGGATATTCAGACGCGCGAAG
GGGTGAACAACAACGCGAAAGGGGCGTCGCTGGCAACGGTGGTGCGTATTTACCAGCTTAAAGAGCGTAAGGCGTTTGAC
AGTACTGATTATCCGTCACTGTTCGCCAGTGACAGTCAGGCTATTAAAGCCGACCTGGTGGCGGAAAAGGATATTCGCCT
GCGCCCTGGCGAATCGGTGACGCTGGATATGCCGATGGAAGAGAGCGCGCAGGTTGTGGCGGTGGCGGGGATGTTTATGG
CACCGGATCAGGTAAACGATACCTGGCGTATTACCCTGACCCGTGACGACCTTGACCCGGATAAGGCGCGGGTTATTGAA
GTCAGTAATAACCGCCTGACGCTGAAACCGCTGGAGGGGGAATGA