Detailed information of component protein


Summary

Component ID T6CP207851
Component protein type TssF
T6SS ID (Type) T6SS13921 insolico (Type i2)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (588 a.a.); Nucleotide sequence (1764 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS17720
Coordinate (Strand) 3726404..3728167 (+)
NCBI ID WP_063149317.1
RefSeq NZ_CP056118
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 4.1e-181 1..582
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-587 MEDLTLRYFDAEMRYLREAAKEFAQTHPDRAAMLDLDKAGTPDPYVERLFEGFAFSMGRLREKIDDDLPELTESLVSMLWPHYLRTIPSLSVVVLSPDVPAMKMAETLSAGLEISSRPVGPKNTVCRYRTTRDLTLNPLAVEKVIMTTEPDGRSLLRVRFACSTQADWPQTDLRHLPLYLGEDRVTGSSLHLWLTKRQAALYIRLPGQTERIALDGYFSPGGFAEEDRLWPKGDSAFSGYQLLLEYFTFREKFMFVHLNGLENITLPAGTAYFDIEVVFSQVWQSDLPVTDSSLRLHCVPVINLFTLEADPLTISGLESEYLLRPKRLQDGHTEIYSVDSVNGSGRTGEAHYVPFASFRHQGGMMRRHAPERYYHTRVKRGVTGMHDTWLILSGQQWEADRMLERETVSLRITGTNGQLPRRALQSTLLDRCEQVYDSPLTVRNLCKPTLPAYPPAEDRFHWRVMSHLGSRFLNMMSSAEVLRRTLSLYNWRDDEMNNRRLDAILDVRHHRTQRFEDGFLLRGLDVEVTLDSNGFTGEGDIHLFGELLNRFFALYADMNQFNQLTLIVQPEGKCIRWKENHSPRLPG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9960 - -


  Protein sequence: 588 a.a.    

>T6CP207851 NZ_CP056118:3726404-3728167 [Enterobacter sp. DSM 30060] [TssF]
MEDLTLRYFDAEMRYLREAAKEFAQTHPDRAAMLDLDKAGTPDPYVERLFEGFAFSMGRLREKIDDDLPELTESLVSMLW
PHYLRTIPSLSVVVLSPDVPAMKMAETLSAGLEISSRPVGPKNTVCRYRTTRDLTLNPLAVEKVIMTTEPDGRSLLRVRF
ACSTQADWPQTDLRHLPLYLGEDRVTGSSLHLWLTKRQAALYIRLPGQTERIALDGYFSPGGFAEEDRLWPKGDSAFSGY
QLLLEYFTFREKFMFVHLNGLENITLPAGTAYFDIEVVFSQVWQSDLPVTDSSLRLHCVPVINLFTLEADPLTISGLESE
YLLRPKRLQDGHTEIYSVDSVNGSGRTGEAHYVPFASFRHQGGMMRRHAPERYYHTRVKRGVTGMHDTWLILSGQQWEAD
RMLERETVSLRITGTNGQLPRRALQSTLLDRCEQVYDSPLTVRNLCKPTLPAYPPAEDRFHWRVMSHLGSRFLNMMSSAE
VLRRTLSLYNWRDDEMNNRRLDAILDVRHHRTQRFEDGFLLRGLDVEVTLDSNGFTGEGDIHLFGELLNRFFALYADMNQ
FNQLTLIVQPEGKCIRWKENHSPRLPG*

  Nucleotide sequence: 1764 bp    

>T6CP207851 NZ_CP056118:3726404-3728167 [Enterobacter sp. DSM 30060] [TssF]
ATGGAAGATTTAACCCTGCGTTATTTTGACGCTGAAATGCGCTACCTGCGCGAGGCGGCGAAAGAGTTCGCGCAGACGCA
CCCCGACCGGGCGGCAATGCTCGACCTGGACAAGGCGGGCACACCTGACCCGTATGTTGAACGGCTGTTTGAGGGCTTCG
CCTTCTCCATGGGACGTCTGCGCGAAAAGATAGATGACGACCTGCCGGAGTTGACCGAAAGTCTGGTGAGCATGCTGTGG
CCGCACTACCTGCGTACCATCCCGTCCCTGTCGGTGGTGGTGCTGTCGCCGGATGTGCCGGCGATGAAAATGGCGGAAAC
GTTGTCCGCCGGGCTGGAAATCAGCTCCCGCCCGGTCGGTCCTAAAAACACTGTCTGCCGCTACCGCACCACCCGGGATC
TGACGCTTAATCCGCTCGCGGTGGAGAAGGTCATTATGACCACGGAGCCTGACGGGCGTTCGCTCCTGCGGGTGCGTTTT
GCCTGTAGTACGCAGGCGGACTGGCCGCAGACTGACCTCCGGCATCTGCCGTTGTATCTTGGCGAAGATAGGGTGACGGG
CAGCAGCCTGCACCTCTGGCTGACAAAACGTCAGGCGGCGCTGTACATTCGCCTGCCGGGGCAGACGGAGCGGATCGCAC
TGGATGGTTATTTCTCGCCGGGCGGTTTTGCTGAGGAAGACCGGCTGTGGCCGAAGGGCGACAGCGCCTTCAGCGGTTAC
CAGTTGCTGCTGGAGTATTTCACCTTTCGCGAAAAGTTTATGTTCGTCCATCTTAACGGGCTGGAAAATATCACGCTCCC
GGCGGGTACGGCGTACTTCGATATCGAGGTGGTGTTCAGCCAGGTATGGCAGAGCGATTTACCGGTAACAGACAGCAGCC
TGCGCCTGCACTGCGTGCCGGTGATAAACCTGTTCACCCTGGAAGCTGACCCGCTGACCATTAGCGGGCTGGAGAGTGAA
TATCTGCTGCGCCCGAAACGTCTTCAGGACGGGCATACCGAGATTTACTCGGTGGACAGCGTCAACGGCTCCGGGCGTAC
CGGCGAAGCGCACTATGTGCCGTTCGCCAGTTTTCGCCATCAGGGCGGCATGATGCGTCGTCACGCACCGGAACGGTATT
ACCACACCCGCGTGAAGCGGGGCGTAACAGGTATGCACGATACCTGGCTGATACTGAGCGGCCAGCAGTGGGAAGCTGAC
CGGATGCTGGAGCGGGAAACGGTCTCGCTGCGCATCACTGGCACCAACGGCCAGTTACCGCGTCGGGCGTTGCAGAGCAC
GCTGCTGGACCGCTGTGAACAGGTCTATGACTCGCCCCTCACCGTGCGTAATCTGTGCAAGCCGACGCTGCCCGCATACC
CGCCTGCGGAGGATCGCTTCCACTGGCGGGTGATGAGCCATCTGGGCTCCCGGTTTCTCAATATGATGAGCAGCGCTGAG
GTGCTGCGCCGCACACTCTCGCTCTATAACTGGCGGGACGACGAGATGAACAACCGTCGCCTCGATGCCATCCTGGATGT
CAGGCACCATCGCACTCAGCGCTTTGAGGACGGTTTTTTGCTGCGCGGGCTGGACGTGGAGGTGACGCTCGACAGCAATG
GATTTACCGGAGAGGGCGATATCCATCTGTTTGGCGAACTGCTCAACCGTTTTTTTGCCCTGTATGCCGATATGAACCAG
TTTAACCAGCTCACGCTGATTGTTCAGCCAGAAGGGAAATGTATCCGTTGGAAAGAGAATCACAGTCCGCGCCTGCCCGG
CTGA