Detailed information of component protein


Summary

Component ID T6CP207847
Component protein type TssH
T6SS ID (Type) T6SS13921 insolico (Type i2)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (86 a.a.); Nucleotide sequence (258 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS17660
Coordinate (Strand) 3712480..3712737 (+)
NCBI ID WP_038415927.1
RefSeq NZ_CP056118
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-85 MENPAILLRRLNPYCARAMEGAASLCQTRAHAEILPEHWLLNQQILPVLSQQLLSHMAAGQKPHTLTLGWDEEEGVMIELRQEDE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8629 - -


  Protein sequence: 86 a.a.    

>T6CP207847 NZ_CP056118:3712480-3712737 [Enterobacter sp. DSM 30060] [TssH]
MENPAILLRRLNPYCARAMEGAASLCQTRAHAEILPEHWLLNQQILPVLSQQLLSHMAAGQKPHTLTLGWDEEEGVMIEL
RQEDE*

  Nucleotide sequence: 258 bp    

>T6CP207847 NZ_CP056118:3712480-3712737 [Enterobacter sp. DSM 30060] [TssH]
ATGGAAAATCCAGCCATCCTGTTACGCCGTCTTAACCCTTACTGTGCCCGTGCGATGGAAGGGGCCGCGTCCCTGTGCCA
GACCCGCGCCCATGCGGAAATCCTGCCCGAGCACTGGCTGCTGAACCAGCAGATTCTGCCGGTCCTGAGCCAGCAGTTGC
TGAGCCATATGGCGGCGGGGCAGAAGCCGCATACCCTGACGCTGGGCTGGGATGAGGAAGAAGGGGTAATGATTGAGCTG
CGGCAGGAGGATGAGTGA