Detailed information of component protein


Summary

Component ID T6CP207849
Component protein type TssI
T6SS ID (Type) T6SS13921 insolico (Type i2)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (841 a.a.); Nucleotide sequence (2523 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS17675
Coordinate (Strand) 3713817..3716339 (+)
NCBI ID WP_063149310.1
RefSeq NZ_CP056118
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2.3e-62 40..361
DUF2345 PF10106.11 1.2e-45 617..762
T6SS_Vgr PF13296.8 7.9e-34 497..596
Phage_base_V PF04717.14 7.2e-07 410..477
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-840 MNLTDSLQNVLTGAGTLNRYRLDIPSCPSPLDVEDFSGIEGLSRIYRYDIIFTSTDKHLDAAWFLCKPATLTMGGGLLESPTEQKKVHGVITHFRRISGSADQTQYLITLKPFLFLLDKQHRSHRFFVNKSVPEVVEQVLQEHNLHGWEYEFNLKQSYPKREQINQYQESDLAFIQRLLAEVGIFYWFTLQEDAQTEVVHFTDAQRALVFGKTLPVNSPSGMSDSGADSVWGLNITHNVVEASVTTKDYNHRDAQSILQSAPADMTRGDGEGVTYGDVYHYRLRHLARGDKIDPTAETANFYARLDHERFLANQTQITGYSTAAWLAPAQVLNITDGLPPTLPAVLQEPVLVISTHFTASRKSALLVDILGVPYSETVCWRPAPLPRPKVTGTMTARVTSAKANDIYAWQDASGLYRVKFDADRDEKGQGQESMPVRLAKPYGGDVYGFHFPLIQGTEVAIAFHEGDPDRPYIAHALHDSRHVDHVTEKNSTRNVIRTPTNNKLRMEDKRGEEHIKLSTEYGGKTQLNLGHNVDASRELRGEGFELRTDKWGAIRGGKGIFISGDVQPSAQGKTLDMNAAIAQLQSALELVTALAQSVAVSGALDADRSSQQKLSLALNQLKEAGILASAPAGIALTTPRNIQLSSGHTLTATAGENIDMSIFKKLTVAAGEAISLFAQKMGIKIFAARGIVDIQAQTDAMRLQSDKTLNLNSVNSEIILNAAQGITLTSTGGAYIKIKDGSVEIGAPGKIDLKSANILWGGISSLEKALKPMTVEDPQFKYPMNERFQVLDKNTNQPKALIPYRIETADGMTLRGITDENGYTQCHYGVDPKSIKLFFE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9747 - -


  Protein sequence: 841 a.a.    

>T6CP207849 NZ_CP056118:3713817-3716339 [Enterobacter sp. DSM 30060] [TssI]
MNLTDSLQNVLTGAGTLNRYRLDIPSCPSPLDVEDFSGIEGLSRIYRYDIIFTSTDKHLDAAWFLCKPATLTMGGGLLES
PTEQKKVHGVITHFRRISGSADQTQYLITLKPFLFLLDKQHRSHRFFVNKSVPEVVEQVLQEHNLHGWEYEFNLKQSYPK
REQINQYQESDLAFIQRLLAEVGIFYWFTLQEDAQTEVVHFTDAQRALVFGKTLPVNSPSGMSDSGADSVWGLNITHNVV
EASVTTKDYNHRDAQSILQSAPADMTRGDGEGVTYGDVYHYRLRHLARGDKIDPTAETANFYARLDHERFLANQTQITGY
STAAWLAPAQVLNITDGLPPTLPAVLQEPVLVISTHFTASRKSALLVDILGVPYSETVCWRPAPLPRPKVTGTMTARVTS
AKANDIYAWQDASGLYRVKFDADRDEKGQGQESMPVRLAKPYGGDVYGFHFPLIQGTEVAIAFHEGDPDRPYIAHALHDS
RHVDHVTEKNSTRNVIRTPTNNKLRMEDKRGEEHIKLSTEYGGKTQLNLGHNVDASRELRGEGFELRTDKWGAIRGGKGI
FISGDVQPSAQGKTLDMNAAIAQLQSALELVTALAQSVAVSGALDADRSSQQKLSLALNQLKEAGILASAPAGIALTTPR
NIQLSSGHTLTATAGENIDMSIFKKLTVAAGEAISLFAQKMGIKIFAARGIVDIQAQTDAMRLQSDKTLNLNSVNSEIIL
NAAQGITLTSTGGAYIKIKDGSVEIGAPGKIDLKSANILWGGISSLEKALKPMTVEDPQFKYPMNERFQVLDKNTNQPKA
LIPYRIETADGMTLRGITDENGYTQCHYGVDPKSIKLFFE*

  Nucleotide sequence: 2523 bp    

>T6CP207849 NZ_CP056118:3713817-3716339 [Enterobacter sp. DSM 30060] [TssI]
ATGAATCTCACTGACTCTTTGCAAAACGTTTTAACCGGGGCGGGAACCCTGAACCGCTACAGGCTGGATATTCCTTCCTG
TCCTTCTCCACTTGATGTGGAAGACTTCAGCGGTATTGAAGGCCTGAGCAGAATTTACAGGTATGACATCATTTTTACGA
GTACGGACAAGCATCTTGATGCTGCCTGGTTTTTGTGTAAACCCGCAACCCTTACGATGGGGGGCGGGTTACTGGAGAGC
CCGACTGAACAGAAAAAAGTGCACGGTGTCATTACTCATTTCAGACGCATTTCCGGCTCTGCCGACCAGACACAGTACCT
GATCACGCTTAAGCCATTCCTGTTTTTGCTGGATAAGCAGCACCGCAGCCACCGTTTCTTTGTCAATAAGTCAGTACCCG
AAGTAGTCGAACAAGTGTTACAGGAGCATAACCTGCATGGCTGGGAATATGAATTTAACCTCAAGCAGAGCTACCCGAAG
CGCGAGCAGATAAACCAGTATCAGGAAAGTGACCTGGCGTTTATTCAGCGCCTGCTGGCGGAGGTGGGGATATTTTACTG
GTTTACCCTCCAGGAAGACGCGCAGACAGAAGTGGTGCATTTTACCGATGCGCAGCGGGCGCTGGTATTTGGTAAAACCC
TGCCAGTCAACAGTCCGTCCGGGATGAGCGACAGCGGCGCTGACTCGGTGTGGGGCCTGAACATCACCCATAACGTGGTG
GAAGCTAGCGTCACCACGAAAGATTACAACCACCGTGACGCACAGAGCATACTGCAGTCGGCACCGGCGGATATGACCCG
GGGAGACGGTGAAGGGGTGACCTATGGTGATGTCTACCATTACCGGCTGCGCCATCTGGCGCGCGGCGACAAAATAGACC
CCACGGCAGAAACGGCTAACTTTTACGCCCGCCTGGACCACGAGCGTTTTCTGGCAAACCAGACGCAAATCACAGGCTAC
AGCACTGCGGCGTGGCTGGCACCTGCTCAGGTGCTGAATATTACCGACGGCCTGCCACCCACCCTGCCTGCTGTCTTACA
GGAACCGGTGCTGGTTATCAGCACACATTTTACTGCCAGTCGCAAGAGCGCCCTTCTGGTGGATATTTTGGGCGTGCCGT
ACAGCGAAACGGTGTGCTGGCGTCCGGCACCGCTGCCGCGCCCGAAGGTAACCGGGACGATGACGGCTCGCGTAACCAGC
GCAAAAGCCAACGATATCTACGCCTGGCAGGATGCATCCGGGCTGTACCGGGTGAAATTTGACGCCGATCGTGACGAGAA
AGGTCAGGGCCAGGAGAGCATGCCGGTACGCCTCGCAAAACCCTACGGTGGTGACGTGTACGGCTTTCACTTCCCGCTCA
TTCAGGGAACGGAAGTGGCGATAGCATTCCATGAAGGCGACCCCGACCGTCCCTATATCGCCCATGCGCTGCATGACTCG
CGGCATGTTGACCATGTGACGGAGAAGAACAGCACCCGGAATGTGATCCGCACGCCGACGAATAACAAGCTGCGGATGGA
AGATAAACGGGGTGAAGAGCATATCAAGCTCAGCACGGAGTACGGCGGCAAGACGCAGCTGAACCTGGGGCACAATGTGG
ATGCCAGCCGTGAATTGCGGGGGGAAGGATTTGAACTACGCACGGATAAATGGGGGGCGATACGTGGTGGCAAGGGAATT
TTTATTAGTGGGGATGTTCAACCAAGTGCCCAGGGCAAAACTCTTGATATGAACGCGGCTATTGCGCAATTACAAAGTGC
TTTAGAATTAGTCACTGCATTAGCGCAAAGTGTCGCTGTGTCTGGTGCTCTTGATGCCGATCGTTCGTCACAACAAAAAC
TTAGTCTGGCCCTGAATCAGTTAAAAGAAGCGGGAATACTGGCATCAGCGCCAGCAGGAATCGCATTAACAACACCCAGA
AATATTCAACTGTCGTCCGGGCACACATTGACGGCTACGGCTGGTGAAAATATTGATATGAGCATTTTCAAAAAATTGAC
GGTCGCAGCAGGCGAAGCTATAAGTTTGTTTGCGCAAAAAATGGGCATTAAAATATTTGCAGCAAGAGGTATTGTAGATA
TACAAGCGCAAACAGATGCAATGCGCCTTCAGTCTGATAAAACGTTGAATCTCAATAGTGTTAATAGTGAAATAATATTG
AACGCTGCACAGGGTATAACATTAACCAGTACTGGCGGGGCATATATAAAAATAAAAGATGGATCTGTAGAAATTGGTGC
CCCAGGGAAAATCGATCTTAAAAGCGCCAATATTTTATGGGGAGGGATATCTTCACTCGAAAAGGCGTTAAAACCCATGA
CGGTAGAGGACCCGCAATTCAAATACCCCATGAATGAACGTTTTCAGGTATTAGATAAAAATACCAATCAACCTAAAGCT
TTAATACCTTATCGCATAGAAACTGCGGATGGCATGACGCTTAGAGGTATTACTGACGAAAATGGTTACACACAATGCCA
TTACGGAGTAGATCCTAAATCCATTAAATTGTTTTTTGAGTAA