Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01298  |
| T6SS type | Type i1 |
| Strain | Pseudomonas sp. JY-Q |
| Replicon (RefSeq) | chromosome (NZ_CP011525) |
| Location | 3676809..3695644 |
| Function | - |
| Comment | - |
| References | [1] Li J, Xie L, Qian S, Tang Y, Shen M, Li S, Wang J, Xiong L, Lu J, Zhong W. et al (2021) A Type VI Secretion System Facilitates Fitness, Homeostasis, and Competitive Advantages for Environmental Adaptability and Efficient Nicotine Biodegradation.. Appl Environ Microbiol. 87(9). [PudMed:33608299] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | FHA | TagO | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| AA098_RS16685 | 3672372..3673142 | - | 771 | pseudogene | BCSC C-terminal domain-containing protein | ||
| AA098_RS16690 | 3673112..3674575 | - | 1464 | WP_064614790.1 | peptidase | ||
| AA098_RS29550 | 3674724..3674879 | - | 156 | WP_177342683.1 | hypothetical protein | ||
| AA098_RS16695 | 3674878..3676731 | + | 1854 | WP_004574230.1 | ABC transporter ATP-binding protein/permease | ||
| T6CP016194 | TssM | AA098_RS16700 (tssM) | 3676809..3680426 | - | 3618 | WP_054889526.1 | type VI secretion system membrane subunit TssM |
| T6CP016195 | TssA | AA098_RS16705 (tssA) | 3680423..3681886 | - | 1464 | WP_014859253.1 | type VI secretion system protein TssA |
| T6CP016196 | TagO | AA098_RS16710 (tagO) | 3681874..3682524 | - | 651 | WP_177331243.1 | type VI secretion system-associated protein TagO |
| AA098_RS16715 | 3682569..3683597 | - | 1029 | WP_011911495.1 | IS30-like element ISPsp7 family transposase | ||
| T6CP016197 | TssB | AA098_RS16720 (tssB) | 3683967..3684470 | + | 504 | WP_033725935.1 | type VI secretion system contractile sheath small subunit |
| T6CP016198 | TssC | AA098_RS16725 (tssC) | 3684488..3685978 | + | 1491 | WP_003254167.1 | type VI secretion system contractile sheath large subunit |
| T6CP016199 | TssE | AA098_RS16730 (tssE) | 3685975..3686385 | + | 411 | WP_060538223.1 | type VI secretion system baseplate subunit TssE |
| T6CP016200 | TssF | AA098_RS16735 (tssF) | 3686389..3688155 | + | 1767 | WP_060538224.1 | type VI secretion system baseplate subunit TssF |
| T6CP016201 | TssG | AA098_RS16740 (tssG) | 3688119..3689135 | + | 1017 | WP_060538225.1 | type VI secretion system baseplate subunit TssG |
| T6CP016202 | FHA | AA098_RS16745 | 3689132..3689701 | + | 570 | WP_003254171.1 | FHA domain-containing protein |
| T6CP016203 | TssJ | AA098_RS16750 (tssJ) | 3689698..3690495 | + | 798 | WP_014753483.1 | type VI secretion system lipoprotein TssJ |
| T6CP016204 | TssK | AA098_RS16755 (tssK) | 3690551..3691888 | + | 1338 | WP_064614791.1 | type VI secretion system baseplate subunit TssK |
| T6CP016205 | TssL | AA098_RS16760 | 3691890..3692753 | + | 864 | WP_060538226.1 | type IVB secretion system protein IcmH/DotU |
| T6CP016206 | TssD | AA098_RS16765 | 3692886..3693401 | + | 516 | WP_003251355.1 | Hcp family type VI secretion system effector |
| T6CP016207 | TssI | AA098_RS16770 (tssI) | 3693476..3695644 | + | 2169 | WP_060546558.1 | type VI secretion system tip protein VgrG |
| AA098_RS16775 | 3695641..3696564 | + | 924 | WP_054889727.1 | DUF4123 domain-containing protein | ||
| AA098_RS16780 | 3696557..3699547 | + | 2991 | WP_064614792.1 | hypothetical protein | ||
| AA098_RS16785 | 3699550..3700440 | + | 891 | WP_064614793.1 | hypothetical protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|