Detailed information of component protein


Summary

Component ID T6CP016195
Component protein type TssA
T6SS ID (Type) T6SS01298 insolico (Type i1)
Strain Pseudomonas sp. JY-Q
Replicon chromosome
Sequence Protein sequence (488 a.a.); Nucleotide sequence (1464 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) AA098_RS16705
Coordinate (Strand) 3680423..3681886 (-)
NCBI ID WP_014859253.1
RefSeq NZ_CP011525
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 2.8e-66 222..471
ImpA_N PF06812.14 3e-20 16..126
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-487 MSVVAQVSREEVTRLLAPIDPAVPAGLFDVEDETYQAIDQEMVKLGGLQEASIDWVYIEDASRQYLSQQCKHLRIVAHLSAAWLRSGCWEQWGCTLALLAGMLECYWEAAHPKPGPKGFLGKRKLVALVIDRLAEALPRLDRFTYTPTHAAAAQAALKRLQQQETVQLDTAALGELERLLGKYSELANGVGEAAVPKAPAATEKPAPLADVIATPVSRMSMGNERETRRAVLSMAELINQQDPYDATGYQLRRFGLWAHIQIAPQVRQGNRTELMAVPLDITRVYEEAIASKAVDPALLQRIEKSLTACPFWIRGSFLAATVATQLAMCEVAEAIRCATARFVQRMPSLQQLCFSDGLVFVDDQCLAWLKGTQGPSGQGATPQEFSGLREELVSQLETGGVEPLLLRLQGLQAGFRAPRERCHTTVIAADLLAARGVSWLAQDLCANVARTMQQTTASAWEPEVFQRLQQYAASPVLAVQDKDQEPR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9891 - -


  Protein sequence: 488 a.a.    

>T6CP016195 NZ_CP011525:c3681886-3680423 [Pseudomonas sp. JY-Q] [TssA]
MSVVAQVSREEVTRLLAPIDPAVPAGLFDVEDETYQAIDQEMVKLGGLQEASIDWVYIEDASRQYLSQQCKHLRIVAHLS
AAWLRSGCWEQWGCTLALLAGMLECYWEAAHPKPGPKGFLGKRKLVALVIDRLAEALPRLDRFTYTPTHAAAAQAALKRL
QQQETVQLDTAALGELERLLGKYSELANGVGEAAVPKAPAATEKPAPLADVIATPVSRMSMGNERETRRAVLSMAELINQ
QDPYDATGYQLRRFGLWAHIQIAPQVRQGNRTELMAVPLDITRVYEEAIASKAVDPALLQRIEKSLTACPFWIRGSFLAA
TVATQLAMCEVAEAIRCATARFVQRMPSLQQLCFSDGLVFVDDQCLAWLKGTQGPSGQGATPQEFSGLREELVSQLETGG
VEPLLLRLQGLQAGFRAPRERCHTTVIAADLLAARGVSWLAQDLCANVARTMQQTTASAWEPEVFQRLQQYAASPVLAVQ
DKDQEPR*

  Nucleotide sequence: 1464 bp    

>T6CP016195 NZ_CP011525:c3681886-3680423 [Pseudomonas sp. JY-Q] [TssA]
ATGTCGGTGGTAGCGCAGGTATCCAGGGAAGAGGTCACTCGGTTGCTCGCGCCGATTGATCCGGCAGTTCCGGCTGGCCT
GTTCGATGTCGAGGACGAAACCTATCAGGCCATTGATCAGGAGATGGTCAAGCTGGGTGGGCTGCAGGAAGCCTCGATCG
ACTGGGTCTACATCGAAGACGCGTCCCGTCAGTACCTGAGCCAGCAATGCAAGCACTTGCGGATCGTTGCGCACCTGAGT
GCCGCATGGTTGCGTAGCGGCTGCTGGGAGCAGTGGGGATGCACCTTGGCGTTGCTGGCCGGCATGCTCGAGTGCTATTG
GGAAGCCGCTCATCCCAAGCCAGGACCGAAAGGCTTCCTGGGCAAACGCAAGCTGGTTGCCCTGGTGATCGATCGCTTGG
CCGAGGCGCTACCGCGTCTTGATCGTTTTACCTACACCCCGACCCACGCAGCGGCAGCGCAGGCTGCCTTGAAACGCCTG
CAACAACAGGAAACGGTGCAGCTGGACACGGCAGCACTGGGCGAACTTGAGCGCCTGCTAGGCAAGTACTCGGAACTTGC
CAACGGTGTTGGCGAGGCTGCTGTGCCCAAAGCGCCGGCTGCAACCGAGAAGCCTGCGCCGTTGGCCGATGTCATCGCCA
CACCCGTGTCACGCATGTCGATGGGCAATGAGCGTGAGACACGGCGGGCCGTGCTGTCCATGGCCGAGCTCATCAACCAG
CAGGACCCTTACGACGCTACCGGCTATCAGTTACGGCGTTTCGGTTTGTGGGCGCACATTCAGATTGCTCCCCAGGTCAG
GCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGACATCACGCGGGTCTATGAAGAGGCCATTGCCAGTAAGGCGG
TTGATCCCGCCTTGCTGCAGCGTATTGAAAAGAGCCTGACGGCTTGCCCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCG
ACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCC
GTCGCTGCAGCAGTTGTGCTTCAGCGACGGGCTGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACGCAAG
GGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCTTGCGCGAGGAGTTGGTCAGCCAGCTGGAAACCGGTGGC
GTAGAACCGCTGCTCCTTCGGCTGCAAGGGCTGCAAGCGGGCTTTCGTGCTCCCCGTGAGCGCTGCCACACCACCGTGAT
TGCAGCTGATCTGCTGGCCGCGCGGGGTGTGTCCTGGCTGGCCCAGGACCTGTGCGCCAACGTTGCCCGAACCATGCAGC
AAACCACCGCCAGTGCGTGGGAGCCCGAGGTGTTTCAGCGGCTTCAGCAGTATGCGGCATCCCCAGTGCTGGCAGTTCAA
GACAAGGATCAGGAGCCTCGATGA