Detailed information of component protein


Summary

Component ID T6CP016194
Component protein type TssM
T6SS ID (Type) T6SS01298 insolico (Type i1)
Strain Pseudomonas sp. JY-Q
Replicon chromosome
Sequence Protein sequence (1206 a.a.); Nucleotide sequence (3618 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) AA098_RS16700
Coordinate (Strand) 3676809..3680426 (-)
NCBI ID WP_054889526.1
RefSeq NZ_CP011525
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 5.5e-70 525..830
IcmF-related_N PF14331.8 1e-67 219..473
IcmF_C PF06744.14 2.3e-22 1063..1167
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-18 MNQIWTQLKRWGWPWVTR
Transmembrane helix 19-41 IGLALPLLLGLGALLMLVAIWWL
Outside 42-55 GPQWTWREQQPLAS
Transmembrane helix 56-78 VAHRSVASLVLVLVPLLCWLGVL
Inside 79-467 RTRFRRLQAERRQALAAEQDVALPFVQAQERALSQGLERYLDNAGGRRALYRLPWYLVLGDEQSGKSSFIDRTDQRFTLTRIDQAQARGRQAEALAYPVGWWVSDDAVIIDPPGVFISQKPPVGSAANDPTNASAPPGIQARLWEHLLGWLQRKRSQRALNGVLLVVDLPALLHGKPEQRVALAHGLRTRLYEVSSQLGARLPLYVVLTKFDLLDGFDQFYSQLPAAKRESLLGFTFKLDAVDAFDAWLDEYDEHYGRLLTQLHEQVIDRLDVLGKTAPCGRLFSLHAQLIGLRPILQAFLRETLASDRFTTPPLVRGVYWSSVVQQGDMRNAFVREAAQPYTTKLPLREGKAQGKALVYFIQQAFRRVIYQEAGLAGDNVRVARSKRH
Transmembrane helix 468-487 LLWVGSGVGILAFSIAIASW
Outside 488-1205 QRYAEINGAKAASVLAKSQEYGGHEVDMRLDPTGRNLLAPLDQIRDAVAVFGDYRAAWPVVADFGLYQGRNIGPLVDEAYLSLLSKRFLPALASGVIDAMNAAPPGSEQQMAALRVYRMIEDRNSRRPEWVEDWMARQWQRAFPGQGQLQRDLMQHLKYALAYADTDLPQYRQRVSEVQQALRKLPLPQRVYAGLKQQSYEQVHAGLDLRHQVGPAFDVVYQPSSGSRQGGEDVRLAGMLTAKGFRDYFEPHSQRFAEMAMVDQWALGERSQLDYSDVDRDALTERLYNLYSADYIDSWRRALNAFTVADFRDLDHGVAILEQLTGPAAPLQRLLDTVRDNTSLASPAVVESPGELSTLRVATGKPEQQALAIQRAFAGLGAMLQATGEKPSYYDETLGAVAAVLDYAKAVQESPDRGKAALQAVHQRFAMTGQDPIGTLQRVATGLPEPISHQIRKLADQTAQVLNVEALRELERRWDADVYSFFQQRLAGRYPFVVKAPDASLDDFEAFFGPKGRLQQFNDRYLKVFLKDNLEALQSAQHGQSLIRADVIEQLELAERIRETFFDQRGQLSVQFSIEPLGLSANQRTSLLDLDGQLIAYTHGPSHITGIVWPNTLGQQVRSNLTLLRQNGNSSSLEYRGPWSMFRLLSRGALNGRTATSVDLSFRTGDGVMRYRLNAEKAFNPITQQPFKGFRLPRGLLQQPANGVQAALSDEQRL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9959 - -


  Protein sequence: 1206 a.a.    

>T6CP016194 NZ_CP011525:c3680426-3676809 [Pseudomonas sp. JY-Q] [TssM]
MNQIWTQLKRWGWPWVTRIGLALPLLLGLGALLMLVAIWWLGPQWTWREQQPLASVAHRSVASLVLVLVPLLCWLGVLRT
RFRRLQAERRQALAAEQDVALPFVQAQERALSQGLERYLDNAGGRRALYRLPWYLVLGDEQSGKSSFIDRTDQRFTLTRI
DQAQARGRQAEALAYPVGWWVSDDAVIIDPPGVFISQKPPVGSAANDPTNASAPPGIQARLWEHLLGWLQRKRSQRALNG
VLLVVDLPALLHGKPEQRVALAHGLRTRLYEVSSQLGARLPLYVVLTKFDLLDGFDQFYSQLPAAKRESLLGFTFKLDAV
DAFDAWLDEYDEHYGRLLTQLHEQVIDRLDVLGKTAPCGRLFSLHAQLIGLRPILQAFLRETLASDRFTTPPLVRGVYWS
SVVQQGDMRNAFVREAAQPYTTKLPLREGKAQGKALVYFIQQAFRRVIYQEAGLAGDNVRVARSKRHLLWVGSGVGILAF
SIAIASWQRYAEINGAKAASVLAKSQEYGGHEVDMRLDPTGRNLLAPLDQIRDAVAVFGDYRAAWPVVADFGLYQGRNIG
PLVDEAYLSLLSKRFLPALASGVIDAMNAAPPGSEQQMAALRVYRMIEDRNSRRPEWVEDWMARQWQRAFPGQGQLQRDL
MQHLKYALAYADTDLPQYRQRVSEVQQALRKLPLPQRVYAGLKQQSYEQVHAGLDLRHQVGPAFDVVYQPSSGSRQGGED
VRLAGMLTAKGFRDYFEPHSQRFAEMAMVDQWALGERSQLDYSDVDRDALTERLYNLYSADYIDSWRRALNAFTVADFRD
LDHGVAILEQLTGPAAPLQRLLDTVRDNTSLASPAVVESPGELSTLRVATGKPEQQALAIQRAFAGLGAMLQATGEKPSY
YDETLGAVAAVLDYAKAVQESPDRGKAALQAVHQRFAMTGQDPIGTLQRVATGLPEPISHQIRKLADQTAQVLNVEALRE
LERRWDADVYSFFQQRLAGRYPFVVKAPDASLDDFEAFFGPKGRLQQFNDRYLKVFLKDNLEALQSAQHGQSLIRADVIE
QLELAERIRETFFDQRGQLSVQFSIEPLGLSANQRTSLLDLDGQLIAYTHGPSHITGIVWPNTLGQQVRSNLTLLRQNGN
SSSLEYRGPWSMFRLLSRGALNGRTATSVDLSFRTGDGVMRYRLNAEKAFNPITQQPFKGFRLPRGLLQQPANGVQAALS
DEQRL*

  Nucleotide sequence: 3618 bp    

>T6CP016194 NZ_CP011525:c3680426-3676809 [Pseudomonas sp. JY-Q] [TssM]
ATGAATCAAATATGGACGCAACTCAAACGTTGGGGCTGGCCGTGGGTAACGCGCATTGGCCTGGCGCTGCCGCTGCTGCT
AGGGCTTGGCGCCTTGCTGATGCTGGTCGCTATCTGGTGGCTTGGCCCGCAATGGACGTGGCGGGAGCAGCAGCCGCTGG
CAAGTGTGGCTCATCGCAGCGTGGCAAGCCTGGTGCTCGTGCTGGTGCCGCTTCTGTGCTGGCTTGGGGTGCTGCGCACG
CGCTTTCGCCGCCTGCAAGCGGAGCGCCGGCAGGCACTGGCCGCCGAACAGGATGTCGCGCTACCGTTCGTGCAGGCGCA
AGAGCGGGCCTTGAGCCAGGGGCTTGAGCGGTATCTCGACAATGCCGGTGGGCGACGCGCGTTGTACCGGCTGCCTTGGT
ACCTGGTGTTGGGCGACGAACAGTCCGGTAAAAGCAGCTTCATCGACCGCACCGATCAGCGCTTTACCCTGACGCGTATC
GACCAGGCCCAGGCACGGGGCCGACAGGCTGAAGCACTGGCCTATCCGGTAGGCTGGTGGGTCAGCGACGATGCCGTGAT
CATCGACCCGCCCGGCGTTTTCATCAGTCAAAAACCACCGGTGGGCTCGGCGGCCAACGACCCCACCAATGCCTCCGCGC
CGCCCGGCATCCAGGCCCGGTTATGGGAGCACCTGTTGGGCTGGCTGCAGCGTAAGCGAAGCCAGCGGGCGCTCAATGGT
GTGTTGCTGGTGGTCGACCTGCCGGCGCTGCTGCATGGCAAGCCCGAGCAGCGGGTCGCGCTGGCCCATGGGTTGCGCAC
ACGCCTGTACGAAGTGAGCAGTCAATTGGGCGCGCGCCTGCCGCTGTACGTGGTACTGACCAAATTCGATCTGCTGGACG
GCTTCGACCAGTTCTACAGCCAGCTTCCGGCCGCCAAGCGTGAAAGCCTGTTGGGGTTCACCTTCAAGCTGGATGCGGTT
GACGCGTTCGACGCCTGGCTGGATGAGTATGACGAGCACTACGGGCGGCTTCTCACCCAATTGCATGAGCAGGTCATCGA
TCGGCTGGATGTACTGGGCAAGACAGCACCGTGCGGACGCCTGTTCTCACTGCATGCACAGCTGATTGGGTTGCGCCCCA
TACTGCAGGCATTCTTGCGCGAAACCCTGGCGAGTGACCGGTTCACCACGCCACCCTTGGTGCGTGGTGTGTACTGGTCG
TCAGTGGTACAGCAAGGCGACATGCGCAATGCCTTTGTCCGTGAAGCGGCTCAGCCCTACACGACGAAGCTACCCCTGCG
TGAAGGTAAAGCACAGGGGAAGGCGTTGGTCTATTTCATCCAGCAAGCATTCAGGCGGGTTATTTACCAGGAAGCCGGGC
TGGCGGGCGACAATGTTCGGGTAGCGCGCAGCAAGCGCCACTTGTTGTGGGTGGGCTCTGGTGTGGGCATCCTGGCGTTC
AGTATCGCCATTGCCAGCTGGCAGCGTTACGCCGAGATCAATGGCGCCAAGGCTGCCAGTGTGCTCGCCAAAAGCCAGGA
GTACGGCGGTCACGAAGTCGATATGCGTCTTGATCCGACCGGGCGCAACCTGCTGGCGCCACTGGACCAGATTCGCGATG
CGGTGGCGGTGTTTGGCGACTATCGTGCGGCCTGGCCGGTGGTTGCCGATTTTGGCTTGTATCAAGGGCGCAACATTGGT
CCCTTGGTTGATGAGGCGTACCTCAGCTTGTTGTCGAAACGTTTCTTGCCGGCCTTGGCCAGTGGTGTGATCGATGCCAT
GAACGCTGCACCCCCTGGCAGTGAGCAACAAATGGCCGCGCTCAGGGTTTACCGGATGATCGAGGACCGCAATAGCCGCC
GGCCAGAATGGGTCGAGGACTGGATGGCCCGTCAGTGGCAACGGGCCTTTCCTGGCCAGGGTCAGTTGCAGCGTGACCTC
ATGCAGCATCTGAAGTACGCCTTGGCCTATGCCGATACCGATTTGCCGCAGTACCGCCAGCGGGTCAGCGAAGTGCAGCA
GGCGTTGCGCAAATTGCCGTTGCCACAGCGGGTCTACGCTGGGCTGAAACAACAATCGTACGAGCAGGTGCACGCCGGGC
TGGACCTGCGCCACCAGGTAGGGCCTGCGTTCGATGTGGTGTACCAGCCGTCTTCCGGGTCAAGGCAAGGGGGGGAGGAT
GTAAGGCTGGCCGGCATGCTCACCGCCAAGGGCTTCAGGGATTACTTCGAGCCGCACAGCCAACGCTTCGCTGAAATGGC
GATGGTTGATCAATGGGCATTGGGGGAGCGCAGTCAACTCGACTATTCGGACGTCGACCGCGATGCATTGACCGAGCGGC
TGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGAACGCGTTTACGGTGGCTGACTTCCGTGAT
CTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCGTTGCAACGGCTGCTGGATACGGTCAGGGA
TAACACCTCGCTTGCGTCTCCAGCAGTTGTTGAATCACCGGGTGAGCTGAGTACGCTGCGGGTAGCAACCGGAAAACCCG
AGCAACAAGCGTTGGCTATCCAGCGGGCGTTTGCAGGCCTGGGCGCCATGCTGCAGGCGACAGGAGAAAAGCCGAGCTAC
TACGATGAAACCCTCGGCGCTGTTGCGGCCGTGCTGGACTACGCCAAGGCCGTACAGGAAAGCCCGGACCGCGGCAAGGC
CGCGTTGCAAGCCGTGCATCAGCGCTTTGCGATGACAGGGCAGGACCCGATCGGCACCCTGCAACGTGTTGCCACAGGTT
TACCGGAGCCTATCAGCCACCAGATCAGAAAGCTCGCCGACCAGACTGCCCAGGTGCTGAACGTCGAAGCACTGCGCGAA
CTGGAGCGACGTTGGGATGCTGACGTGTACAGTTTTTTCCAGCAACGCCTGGCAGGCCGCTACCCCTTTGTGGTGAAGGC
ACCCGATGCTTCTTTGGATGACTTCGAGGCGTTCTTCGGGCCGAAAGGGCGCCTGCAGCAGTTTAATGATCGGTATCTCA
AGGTTTTCCTGAAGGACAACCTTGAGGCTTTGCAGTCCGCTCAGCACGGGCAATCCCTGATTCGTGCCGACGTGATCGAG
CAGCTCGAGCTGGCGGAGCGCATCCGCGAAACCTTCTTCGATCAGCGTGGCCAGCTGAGTGTGCAGTTCAGCATCGAGCC
CTTGGGGCTCAGTGCGAACCAGCGTACCAGCCTGCTGGACCTGGATGGCCAGTTGATTGCCTACACCCATGGCCCAAGCC
ATATCACGGGTATTGTCTGGCCCAATACCCTGGGGCAGCAGGTCCGTAGCAATCTCACCTTGCTAAGGCAAAATGGCAAC
AGCAGCAGCCTGGAGTACCGTGGCCCGTGGTCGATGTTCCGCTTGCTCAGCCGCGGCGCGCTCAATGGCCGGACGGCGAC
CAGCGTGGACCTGAGCTTCCGGACCGGAGATGGCGTGATGCGCTATCGGCTTAACGCTGAAAAAGCCTTCAATCCTATTA
CCCAGCAACCGTTCAAAGGCTTCCGCTTGCCCCGAGGCTTATTGCAACAGCCAGCCAATGGGGTGCAGGCGGCGCTATCG
GATGAGCAGCGACTATGA