Detailed information of component protein
Summary
Component ID | T6CP016202 |
Component protein type | FHA |
T6SS ID (Type) | T6SS01298 (Type i1) |
Strain | Pseudomonas sp. JY-Q |
Replicon | chromosome |
Sequence | Protein sequence (190 a.a.); Nucleotide sequence (570 bp) |
Reference |
External database links
Locus tag (Gene) | AA098_RS16745 |
Coordinate (Strand) | 3689132..3689701 (+) |
NCBI ID | WP_003254171.1 |
RefSeq | NZ_CP011525 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
FHA | PF00498.28 | 4e-08 | 30..96 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-189 | MNTVTLSITNLDQLQHGVTARHLFDCKGGTIGSGRANWQINDRDQTVAPIHCEIRWIEGSFCVIDHCHRTYLNGSANSLGPLPPRRLVEGDQLLIGTYRLQVQYTQDQACTRSLEDLFNPDPRVLDRLIAEAPAPAWPAQPSAPQPAVEISSVFKAAMGNDPLAALDAADGEGALRESPLQRLIAGAYP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9712 | - | - |
Protein sequence: 190 a.a.
>T6CP016202 NZ_CP011525:3689132-3689701 [Pseudomonas sp. JY-Q] [FHA]
MNTVTLSITNLDQLQHGVTARHLFDCKGGTIGSGRANWQINDRDQTVAPIHCEIRWIEGSFCVIDHCHRTYLNGSANSLG
PLPPRRLVEGDQLLIGTYRLQVQYTQDQACTRSLEDLFNPDPRVLDRLIAEAPAPAWPAQPSAPQPAVEISSVFKAAMGN
DPLAALDAADGEGALRESPLQRLIAGAYP*
MNTVTLSITNLDQLQHGVTARHLFDCKGGTIGSGRANWQINDRDQTVAPIHCEIRWIEGSFCVIDHCHRTYLNGSANSLG
PLPPRRLVEGDQLLIGTYRLQVQYTQDQACTRSLEDLFNPDPRVLDRLIAEAPAPAWPAQPSAPQPAVEISSVFKAAMGN
DPLAALDAADGEGALRESPLQRLIAGAYP*
Nucleotide sequence: 570 bp
>T6CP016202 NZ_CP011525:3689132-3689701 [Pseudomonas sp. JY-Q] [FHA]
ATGAACACAGTCACCTTGAGCATCACCAACCTCGACCAACTGCAGCACGGCGTTACTGCTCGGCACCTGTTCGATTGCAA
GGGCGGCACCATCGGCAGCGGGCGAGCAAACTGGCAGATCAATGACCGCGATCAGACCGTTGCGCCCATCCACTGCGAAA
TCCGCTGGATCGAAGGCAGCTTCTGCGTGATCGACCACTGCCACCGCACCTACCTCAATGGCAGTGCCAACAGCCTGGGG
CCGCTTCCACCCAGACGCCTGGTTGAGGGTGACCAGCTTCTCATTGGTACCTATCGGCTACAGGTTCAGTACACCCAGGA
TCAGGCCTGCACGCGCTCGCTGGAGGACCTGTTCAACCCGGACCCGAGGGTGCTCGACCGCCTGATAGCGGAAGCGCCTG
CACCCGCTTGGCCGGCACAGCCTTCTGCCCCCCAACCAGCCGTCGAGATCTCCTCGGTCTTCAAAGCAGCCATGGGGAAT
GACCCTCTGGCAGCGCTGGACGCAGCAGACGGTGAAGGGGCACTCCGAGAAAGCCCGCTGCAGCGCCTGATTGCCGGAGC
ATACCCATGA
ATGAACACAGTCACCTTGAGCATCACCAACCTCGACCAACTGCAGCACGGCGTTACTGCTCGGCACCTGTTCGATTGCAA
GGGCGGCACCATCGGCAGCGGGCGAGCAAACTGGCAGATCAATGACCGCGATCAGACCGTTGCGCCCATCCACTGCGAAA
TCCGCTGGATCGAAGGCAGCTTCTGCGTGATCGACCACTGCCACCGCACCTACCTCAATGGCAGTGCCAACAGCCTGGGG
CCGCTTCCACCCAGACGCCTGGTTGAGGGTGACCAGCTTCTCATTGGTACCTATCGGCTACAGGTTCAGTACACCCAGGA
TCAGGCCTGCACGCGCTCGCTGGAGGACCTGTTCAACCCGGACCCGAGGGTGCTCGACCGCCTGATAGCGGAAGCGCCTG
CACCCGCTTGGCCGGCACAGCCTTCTGCCCCCCAACCAGCCGTCGAGATCTCCTCGGTCTTCAAAGCAGCCATGGGGAAT
GACCCTCTGGCAGCGCTGGACGCAGCAGACGGTGAAGGGGCACTCCGAGAAAGCCCGCTGCAGCGCCTGATTGCCGGAGC
ATACCCATGA