Detailed information of component protein


Summary

Component ID T6CP016198
Component protein type TssC
T6SS ID (Type) T6SS01298 insolico (Type i1)
Strain Pseudomonas sp. JY-Q
Replicon chromosome
Sequence Protein sequence (497 a.a.); Nucleotide sequence (1491 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) AA098_RS16725
Coordinate (Strand) 3684488..3685978 (+)
NCBI ID WP_003254167.1
RefSeq NZ_CP011525
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 5.8e-122 70..369
VipB_2 PF18945.2 2.1e-45 382..493
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-496 MPKPSSTAITTDATADTLSNATLLDQIMAETKLVPAQEGYQIARQGVSAFITEILKSNDPDQLINKHRADQMIAEIDRMLGNQMDAILHQPEFQQLESSWRSLKLLVDRTDFRENIKLEVLHVTKEDLLDDFENAADITCSGIYKHVYTAGYGQFGGEPVAAMVGNYNFGPSSPDIKLLSYMASVGAMSHAPFLAAPAPEFFNLNSFEELPNLKEIKDLFAGPRHAKWRAFRESEDARHVALTGPRFMLRSAYHPQEQPIESFNYNEGIAGQHDNYLWGNSAFLLASCINDSFARYRWCPNIIGPQSGGAVEDLPVHLYESLGQLQAKIPTEVLISDRKEFELAEEGFIALTMRKDSDNAAFFSANSVQKPKHFPKTPEGLQAQTNYKLGTQLPYLFIVNRLAHYIKVLQREQIGSWKERRDLESELNKWIKQYVADQENPSADVRSRRPLRAARIEVSDVAGDPGWYQVSLAVRPHFKYMGANFEISLVGRLDTQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9177 - -


  Protein sequence: 497 a.a.    

>T6CP016198 NZ_CP011525:3684488-3685978 [Pseudomonas sp. JY-Q] [TssC]
MPKPSSTAITTDATADTLSNATLLDQIMAETKLVPAQEGYQIARQGVSAFITEILKSNDPDQLINKHRADQMIAEIDRML
GNQMDAILHQPEFQQLESSWRSLKLLVDRTDFRENIKLEVLHVTKEDLLDDFENAADITCSGIYKHVYTAGYGQFGGEPV
AAMVGNYNFGPSSPDIKLLSYMASVGAMSHAPFLAAPAPEFFNLNSFEELPNLKEIKDLFAGPRHAKWRAFRESEDARHV
ALTGPRFMLRSAYHPQEQPIESFNYNEGIAGQHDNYLWGNSAFLLASCINDSFARYRWCPNIIGPQSGGAVEDLPVHLYE
SLGQLQAKIPTEVLISDRKEFELAEEGFIALTMRKDSDNAAFFSANSVQKPKHFPKTPEGLQAQTNYKLGTQLPYLFIVN
RLAHYIKVLQREQIGSWKERRDLESELNKWIKQYVADQENPSADVRSRRPLRAARIEVSDVAGDPGWYQVSLAVRPHFKY
MGANFEISLVGRLDTQ*

  Nucleotide sequence: 1491 bp    

>T6CP016198 NZ_CP011525:3684488-3685978 [Pseudomonas sp. JY-Q] [TssC]
ATGCCCAAGCCAAGCAGCACCGCCATCACCACAGACGCAACGGCCGACACATTGAGCAATGCCACCCTGCTCGACCAGAT
CATGGCAGAAACCAAACTGGTACCTGCCCAGGAGGGCTACCAGATTGCCAGGCAGGGCGTATCTGCCTTCATCACCGAAA
TACTCAAAAGCAATGACCCAGATCAACTGATCAACAAGCACCGAGCCGACCAGATGATTGCCGAGATCGACCGAATGCTC
GGCAATCAGATGGATGCCATTCTGCATCAGCCTGAGTTCCAGCAGCTTGAATCATCATGGCGCAGCCTTAAACTTCTGGT
CGACCGCACGGACTTCAGGGAGAACATCAAGCTTGAAGTCTTGCATGTCACGAAAGAGGACCTGCTCGACGACTTCGAAA
ATGCAGCTGACATTACCTGCAGCGGTATCTACAAGCATGTTTACACCGCGGGTTATGGCCAATTCGGGGGAGAGCCGGTT
GCGGCCATGGTAGGCAACTACAACTTCGGCCCCTCTTCCCCTGACATCAAGTTGCTAAGTTACATGGCCTCCGTTGGCGC
CATGTCCCATGCCCCTTTTCTTGCTGCACCTGCCCCCGAATTTTTCAATTTGAACAGCTTCGAGGAGCTGCCTAACCTCA
AGGAAATAAAAGACCTCTTCGCCGGCCCTCGGCATGCCAAGTGGCGCGCTTTTCGTGAAAGCGAAGACGCCCGCCACGTC
GCCCTGACCGGGCCGCGCTTCATGCTTCGCTCCGCTTACCACCCGCAGGAACAACCGATCGAGAGCTTCAACTACAACGA
AGGCATCGCCGGGCAGCACGACAACTACCTGTGGGGCAATTCTGCTTTTCTGTTAGCCAGTTGCATCAACGACAGCTTCG
CCCGCTACCGCTGGTGCCCGAATATCATCGGCCCCCAATCCGGCGGTGCTGTCGAAGACTTGCCGGTCCACCTGTACGAA
TCCCTGGGCCAGTTGCAGGCCAAGATTCCTACCGAGGTGCTGATATCCGACCGCAAGGAATTCGAACTGGCCGAAGAGGG
CTTCATCGCCCTGACCATGCGCAAAGACAGCGACAACGCCGCGTTCTTCTCCGCCAACTCGGTACAAAAGCCCAAGCACT
TCCCGAAAACCCCTGAGGGGCTTCAGGCACAGACCAACTACAAGCTGGGTACCCAGTTGCCCTACCTGTTCATCGTCAAC
CGGCTCGCCCACTACATCAAGGTGCTGCAGCGCGAGCAGATCGGCAGTTGGAAAGAGCGCCGTGACCTTGAGTCCGAGCT
GAACAAATGGATCAAGCAGTACGTCGCCGACCAGGAGAACCCGTCTGCCGACGTTCGCAGCCGCCGGCCGCTGCGTGCCG
CCCGTATTGAGGTCTCGGATGTTGCGGGTGACCCGGGCTGGTACCAGGTTTCGCTCGCCGTACGTCCGCACTTCAAGTAC
ATGGGCGCGAACTTCGAGATTTCCCTGGTCGGGCGGCTCGATACGCAATGA