Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00553  |
| T6SS type | Type i3 |
| Strain | Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 |
| Replicon (RefSeq) | chromosome (NC_016860) |
| Location | 304666..332063 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagJ | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| STMDT12_RS01315 (mltD) | 299924..301291 | - | 1368 | WP_000644706.1 | murein transglycosylase D | ||
| STMDT12_RS01320 (gloB) | 301363..302118 | - | 756 | WP_001052775.1 | hydroxyacylglutathione hydrolase | ||
| STMDT12_RS01325 | 302153..302875 | + | 723 | WP_000801238.1 | class I SAM-dependent methyltransferase | ||
| STMDT12_RS01330 (rnhA) | 302872..303339 | - | 468 | WP_000917872.1 | ribonuclease HI | ||
| STMDT12_RS01335 (dnaQ) | 303403..304134 | + | 732 | WP_001670675.1 | DNA polymerase III subunit epsilon | ||
| T6CP005855 | TssA | STMDT12_RS01345 | 304666..305721 | - | 1056 | WP_000367626.1 | ImpA family type VI secretion system protein |
| T6CP005856 | TssG | STMDT12_RS01350 (tssG) | 305732..306727 | - | 996 | WP_000145244.1 | type VI secretion system baseplate subunit TssG |
| T6CP005857 | TssF | STMDT12_RS01355 (tssF) | 306724..308607 | - | 1884 | WP_000371502.1 | type VI secretion system baseplate subunit TssF |
| T6CP005858 | TssE | STMDT12_RS01360 (tssE) | 308623..309117 | - | 495 | WP_000108007.1 | type VI secretion system baseplate subunit TssE |
| T6CP012827 | TagJ | STMDT12_RS01365 | 309114..309938 | - | 825 | WP_000750535.1 | hypothetical protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| EFF01380 | STM0277 (Tae4) | Tae | Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 | chromosome (NC_016860) | 317684..318169 (+) | 378698249 |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||