Detailed information of component protein


Summary

Component ID T6CP012827
Component protein type TagJ
T6SS ID (Type) T6SS00553 insolico (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium str. T000240
Replicon chromosome
Sequence Protein sequence (275 a.a.); Nucleotide sequence (825 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) STMDT12_RS01365
Coordinate (Strand) 309114..309938 (-)
NCBI ID WP_000750535.1
RefSeq NC_016860
Uniprot ID A0A5I8HRJ5_SALET, A0A625WLD8_SALEN, A0A5Z5P9N3_SALTM, A0A3V3U6M5_SALET, A0A659NZQ6_SALET, A0A0H3NHP8_SALTS, A0A5J0QS01_SALET, A0A4P9SZB1_SALET, A0A5W7ZBU5_SALDE, A0A0W4EMD0_SALER, A0A2T8QSE0_SALET, A0A315GQ69_SALET, A0A2R4DDB0_SALET, A0A5J1TVH2_SALET, A0A0F6AX71_SALT1, A0A3Z1FPP1_SALET, A0A3V2ZGX6_SALET, A0A0D6HFM2_SALTM, A0A3Z2FCY4_SALTU, Q8ZRL8_SALTY
KEGG ID sej:STMUK_0272, seni:CY43_01355, seo:STM14_0317, sey:SL1344_0264, stm:STM0270
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpE PF07024.15 3.5e-43 145..265

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 275 a.a.    

>T6CP012827 NC_016860:c309938-309114 [Salmonella enterica subsp. enterica serovar Typhimurium str.] [TagJ]
MKKTDTLPATLSALIQEYSIAEGIQMAEQQVRENPAKALCRHSLFQLLCVAGDWSRALHQLQLCARMEANYTQEARLYRE
LVRCEMFRHTVFQGEQRPGFLLPQPVWVESLLAALACHDDTGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPV
LELVTGGVYIWLPFSQIRSLESPQPTRLTDLLWKPVNITLVNGDTHGAWLFTRYSGSESASDALRLCRETAWQDGPGETT
VRALGQKVWLTSHGDISLLDMAHCTFHAQENDGA*

  Nucleotide sequence: 825 bp    

>T6CP012827 NC_016860:c309938-309114 [Salmonella enterica subsp. enterica serovar Typhimurium str.] [TagJ]
ATGAAAAAAACTGACACGCTTCCTGCTACCCTGTCCGCGCTGATACAGGAATACTCTATTGCGGAGGGGATTCAGATGGC
GGAGCAGCAGGTTCGGGAAAATCCGGCGAAAGCGCTCTGCCGCCACAGCCTGTTTCAGTTGCTGTGTGTGGCCGGAGACT
GGTCGCGGGCGCTACACCAGCTTCAGCTATGCGCCAGGATGGAGGCCAATTATACCCAGGAGGCCCGGCTGTACCGGGAG
CTGGTTCGCTGCGAAATGTTCCGCCACACCGTTTTTCAGGGTGAACAACGACCCGGTTTTCTTCTGCCGCAGCCCGTTTG
GGTGGAGTCACTGCTGGCGGCACTCGCCTGTCATGACGATACCGGTGAGGTTGATAAACACCGTAATACCGCACTGGAAG
CCATAACAGACACGGGCGGGCAGTGGAACGGCGGCGCATTTGACTGGGCGAGCGACAGCGATTCCCGCCTTGGCCCGGTA
CTTGAGCTAGTCACCGGCGGCGTGTATATCTGGCTGCCGTTTTCGCAAATACGCTCGCTGGAATCGCCGCAACCGACGCG
CCTGACTGATCTGCTGTGGAAACCCGTTAATATCACCCTGGTGAATGGCGATACGCACGGCGCCTGGCTCTTTACCCGTT
ACAGCGGTTCGGAAAGTGCATCCGACGCCCTGCGTCTGTGCAGGGAAACCGCCTGGCAGGACGGCCCCGGCGAAACCACC
GTGCGGGCGCTGGGGCAGAAAGTGTGGCTGACCAGCCACGGCGATATCAGCCTGCTGGACATGGCCCATTGTACCTTTCA
TGCTCAGGAAAACGATGGCGCATGA