Detailed information of component protein
Summary
| Component ID | T6CP005856 |
| Component protein type | TssG |
| T6SS ID (Type) | T6SS00553  (Type i3) |
| Strain | Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 |
| Replicon | chromosome |
| Sequence | Protein sequence (332 a.a.); Nucleotide sequence (996 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | STMDT12_RS01350 |
| Coordinate (Strand) | 305732..306727 (-) |
| NCBI ID | WP_000145244.1 |
| RefSeq | NC_016860 |
| Uniprot ID | A0A3Y2DE54_SALNE, A0A3V4SNL3_SALET, V7IHK3_SALET, A0A625WME0_SALEN, A0A5Z6QPE0_SALTM, A0A5H7K2S0_SALET, A0A736ZC53_SALET, A0A3Z1TWE1_SALET, A0A0H3N7W3_SALTS, A0A3Z3GGX7_SALET, A0A4P9SZ48_SALET, A0A3V6WIW7_SALDE, A0A0M0PTK9_SALER, A0A2T9Q8Y1_SALET, A0A2T8QSD6_SALET, A0A315GQS1_SALET, A0A6C7I7A2_SALTD, A0A740ZYN1_SALET, A0A0F6AX68_SALT1, A0A3V0RQ73_SALET, A0A5X9A325_SALIN, A0A3Z3HRN2_SALMU, A0A3V2ZGX7_SALET, A0A3U8IVM4_SALET, A0A0D6HFN9_SALTM, E8XIT1_SALT4, A0A3Z2FCS9_SALTU, Q8ZRM0_SALTY |
| KEGG ID | sev:STMMW_02651, seo:STM14_0314, sej:STMUK_0269, stm:STM0267, seb:STM474_0278, sey:SL1344_0261, seni:CY43_01340 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_TssG | PF06996.13 | 7.3e-91 | 12..309 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 332 a.a.
>T6CP005856 NC_016860:c306727-305732 [Salmonella enterica subsp. enterica serovar Typhimurium str.] [TssG]
MTGALNQAQKTPWRYGFLNLMRRVDAQLCDTPAGSIWQPRMEKFRLGQTPTMTFAPREIAQVSWQDGRLHLSLYSLGLWG
PNGPLPLHYTELALNRSESRHDPTLVHFSNIFHHRWLTQFWQAWRSAQSAGGGLDKPEHDRFAFYIASLSGQDLRESAES
PLSDHVRLAASAHLVRESRNPDGLAATLAHYFSVPFAVKEFALHWITVANDEITRLGTPAQSSVLGNGALIGQAVPDMQY
KFRLIIGPLTLEDYLRFLPGGNNLPVLTELVRTFIGFEYCWEIELQLKPHAAPPAVIGGAQRLGWTAWAGKAMHDRPVTG
MIFEPEHGLTH*
MTGALNQAQKTPWRYGFLNLMRRVDAQLCDTPAGSIWQPRMEKFRLGQTPTMTFAPREIAQVSWQDGRLHLSLYSLGLWG
PNGPLPLHYTELALNRSESRHDPTLVHFSNIFHHRWLTQFWQAWRSAQSAGGGLDKPEHDRFAFYIASLSGQDLRESAES
PLSDHVRLAASAHLVRESRNPDGLAATLAHYFSVPFAVKEFALHWITVANDEITRLGTPAQSSVLGNGALIGQAVPDMQY
KFRLIIGPLTLEDYLRFLPGGNNLPVLTELVRTFIGFEYCWEIELQLKPHAAPPAVIGGAQRLGWTAWAGKAMHDRPVTG
MIFEPEHGLTH*
Nucleotide sequence: 996 bp
>T6CP005856 NC_016860:c306727-305732 [Salmonella enterica subsp. enterica serovar Typhimurium str.] [TssG]
ATGACCGGCGCTCTCAACCAGGCGCAGAAAACCCCCTGGCGTTACGGATTCCTGAACCTGATGCGGCGCGTGGATGCCCA
GCTCTGTGATACTCCGGCAGGCAGTATCTGGCAGCCACGGATGGAAAAATTCCGTCTGGGACAGACGCCGACGATGACCT
TTGCGCCACGGGAAATCGCCCAGGTCAGCTGGCAGGATGGACGCCTGCACCTGAGCCTGTACAGCCTCGGACTATGGGGG
CCAAACGGCCCGTTGCCGCTGCACTATACCGAGCTGGCACTGAACCGCTCAGAGAGTCGTCACGATCCGACGCTGGTTCA
TTTTTCCAATATTTTTCACCACCGCTGGCTGACGCAGTTCTGGCAGGCATGGCGCAGCGCCCAGTCCGCTGGTGGCGGGC
TGGACAAACCGGAACACGACCGTTTTGCGTTTTATATCGCCAGTCTCAGCGGGCAGGATCTACGGGAAAGCGCCGAAAGC
CCGCTGTCAGATCATGTTCGCCTGGCAGCCTCCGCCCATCTGGTACGCGAATCGCGCAATCCTGACGGGCTGGCCGCCAC
GCTGGCGCACTATTTCAGCGTACCTTTTGCGGTGAAAGAATTCGCCCTGCACTGGATAACGGTGGCGAACGATGAAATCA
CCCGTCTGGGCACGCCCGCGCAGTCTTCGGTGCTGGGCAACGGGGCGCTTATCGGCCAGGCCGTACCGGATATGCAGTAC
AAATTCCGGCTAATTATCGGCCCGCTCACGCTGGAGGATTACCTGCGTTTTCTGCCCGGCGGCAACAATCTGCCCGTGCT
GACAGAACTGGTGCGTACGTTCATCGGTTTTGAATATTGCTGGGAAATTGAGCTGCAGTTGAAGCCTCATGCCGCACCGC
CTGCGGTGATCGGCGGCGCGCAGCGGCTTGGCTGGACGGCCTGGGCAGGTAAAGCCATGCATGACCGTCCGGTGACCGGC
ATGATTTTTGAACCTGAACACGGCTTAACCCACTGA
ATGACCGGCGCTCTCAACCAGGCGCAGAAAACCCCCTGGCGTTACGGATTCCTGAACCTGATGCGGCGCGTGGATGCCCA
GCTCTGTGATACTCCGGCAGGCAGTATCTGGCAGCCACGGATGGAAAAATTCCGTCTGGGACAGACGCCGACGATGACCT
TTGCGCCACGGGAAATCGCCCAGGTCAGCTGGCAGGATGGACGCCTGCACCTGAGCCTGTACAGCCTCGGACTATGGGGG
CCAAACGGCCCGTTGCCGCTGCACTATACCGAGCTGGCACTGAACCGCTCAGAGAGTCGTCACGATCCGACGCTGGTTCA
TTTTTCCAATATTTTTCACCACCGCTGGCTGACGCAGTTCTGGCAGGCATGGCGCAGCGCCCAGTCCGCTGGTGGCGGGC
TGGACAAACCGGAACACGACCGTTTTGCGTTTTATATCGCCAGTCTCAGCGGGCAGGATCTACGGGAAAGCGCCGAAAGC
CCGCTGTCAGATCATGTTCGCCTGGCAGCCTCCGCCCATCTGGTACGCGAATCGCGCAATCCTGACGGGCTGGCCGCCAC
GCTGGCGCACTATTTCAGCGTACCTTTTGCGGTGAAAGAATTCGCCCTGCACTGGATAACGGTGGCGAACGATGAAATCA
CCCGTCTGGGCACGCCCGCGCAGTCTTCGGTGCTGGGCAACGGGGCGCTTATCGGCCAGGCCGTACCGGATATGCAGTAC
AAATTCCGGCTAATTATCGGCCCGCTCACGCTGGAGGATTACCTGCGTTTTCTGCCCGGCGGCAACAATCTGCCCGTGCT
GACAGAACTGGTGCGTACGTTCATCGGTTTTGAATATTGCTGGGAAATTGAGCTGCAGTTGAAGCCTCATGCCGCACCGC
CTGCGGTGATCGGCGGCGCGCAGCGGCTTGGCTGGACGGCCTGGGCAGGTAAAGCCATGCATGACCGTCCGGTGACCGGC
ATGATTTTTGAACCTGAACACGGCTTAACCCACTGA