Detailed information of component protein


Summary

Component ID T6CP005858
Component protein type TssE
T6SS ID (Type) T6SS00553 insolico (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium str. T000240
Replicon chromosome
Sequence Protein sequence (165 a.a.); Nucleotide sequence (495 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) STMDT12_RS01360
Coordinate (Strand) 308623..309117 (-)
NCBI ID WP_000108007.1
RefSeq NC_016860
Uniprot ID A0A5H5K4T6_SALET, A0A0R9N6C9_SALNE, A0A3V4SNW1_SALET, A0A3V2EXH1_SALMO, A0A5X9XBT0_SALET, A0A3V5VSA4_SALET, V7ILA6_SALET, M7S6R3_SALDU, A0A5W7S0Q0_SALET, A0A5I8X4C7_SALET, A0A2C9P3F7_SALET, A0A5I8HT55_SALET, A0A658INB7_SALNE, A0A3U7ZNZ9_SALET, A0A5I5T2E9_SALET, A0A3G3E1W0_SALET, A0A5I3HRR0_SALET, A0A5I0QTY2_SALET, A0A3T3GE95_SALET, A0A3V9CLB2_SALEN, A0A5W0E4D4_SALTM, A0A7U1Q6M8_SALET, A0A3V3CMG8_SALET, A0A5I5YXX7_SALET, A0A418Z759_SALET, A0A2T8L4B1_SALET, A0A3V5ZAW9_SALET, A0A659N413_SALET, A0A447JMT7_SALET, A0A5I0SMM3_SALET, A0A5J0CNA6_SALET, A0A5X5NR36_SALET, A0A5H6P2W3_SALET, A0A6C8LNN6_SALET, A0A5X9WJ34_SALET, A0A0H3N8D2_SALTS, A0A5H5T1C6_SALET, A0A3Z3GFF1_SALET, A0A4Q8P4Q9_SALET, A0A736NPN9_SALET, A0A4P9T0R3_SALET, A0A5I4KMJ6_SALET, A0A602DKR6_SALET, A0A3U8PAJ8_SALBE, A0A3V8R741_SALDE, A0A3V8Z1Y5_SALON, A0A401AUE7_SALSE, A0A5I2DSQ4_SALET, A0A4Y5MVB2_SALET, A0A0M0PMY4_SALER, Q57SZ1_SALCH, A0A2T9Q906_SALET, A0A2T8QSG5_SALET, A0A5H8UN67_SALET, A0A3V8D959_SALET, A0A5I8GX02_SALET, A0A0H3BTC0_SALNS, A0A4Z0NMP8_SALET, A0A6C6ZU42_SALDC, A0A315GLP4_SALET, A0A494J144_SALET, C0Q6N7_SALPC, A0A2R4DDC9_SALET, A0A702BAA3_SALET, A0A5J0IU80_SALET, A0A5Z7HIL1_SALET, A0A5J1TH83_SALET, A0A5I0RRS8_SALET, A0A6C7I6S6_SALTD, A0A605YLH3_SALET, A0A3V3ZGH8_SALET, A0A5I2K3H6_SALBL, A0A3V7I8W0_SALET, A0A3U5N781_SALET, A0A0F6AX70_SALT1, A0A3U9NBV0_SALET, A0A4U8ABH3_SALET, A0A752MF98_SALGL, A0A2T8XXP9_SALIN, A0A6C8G3Q6_SALIN, A0A3T3EX63_SALMU, A0A5W9CQH2_SALRU, A0A3V4QCZ7_SALTH, A0A3V4FLR7_SALET, A0A3U8IVL6_SALET, H9L4H3_SALTM, E8XIT3_SALT4, A0A2T8WWL4_SALET, A0A5H8T2S8_SALET, A0A5H6FK49_SALET, A0A3T3IKE8_SALDU, A0A3Z2FCU3_SALTU, Q93IT2_SALTY
KEGG ID sev:STMMW_02671, sey:SL1344_0263, seni:CY43_01350, seb:STM474_0280, sed:SeD_A0292, sec:SCH_0264, seo:STM14_0316, sej:STMUK_0271, sei:SPC_0278, stm:STM0269, see:SNSL254_A0294
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 1.5e-22 39..143
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 165 a.a.    

>T6CP005858 NC_016860:c309117-308623 [Salmonella enterica subsp. enterica serovar Typhimurium str.] [TssE]
MSTSRFTPANHLLPTLFDRLCDNAPYQKIDRDISVTPVQLKEIIRRDLSFLLNTISHEGDIDARRYPQAAASVLNYGLPP
LAGSFMYEHKWDDISEAIRRAIIRFEPRLNAATLRVTPLLDKTRQGSYNTLQFEIRGQILTQPYPTEFLVRSALDMELSR
ITFF*

  Nucleotide sequence: 495 bp    

>T6CP005858 NC_016860:c309117-308623 [Salmonella enterica subsp. enterica serovar Typhimurium str.] [TssE]
ATGAGCACGTCTCGTTTTACACCCGCTAACCACCTGCTGCCCACGCTGTTTGATCGGCTGTGTGACAATGCTCCGTATCA
GAAAATTGACCGGGATATCAGCGTCACGCCGGTACAACTGAAGGAGATCATTCGCCGGGATCTCTCCTTTTTGCTCAATA
CCATTAGCCACGAGGGTGACATCGACGCCCGGCGCTATCCGCAGGCGGCGGCGTCAGTGCTCAACTATGGCCTGCCGCCG
CTGGCGGGCAGCTTTATGTATGAGCATAAGTGGGACGATATCAGCGAGGCGATCCGGCGCGCCATTATCCGTTTCGAACC
CCGGCTGAACGCCGCCACACTCAGGGTCACGCCCTTGCTCGATAAAACCCGGCAGGGTAGCTATAACACGCTACAGTTTG
AAATTCGCGGACAAATTCTGACGCAGCCGTATCCCACGGAGTTTCTGGTACGCAGCGCGCTGGATATGGAGCTGAGCCGC
ATTACGTTCTTTTAA