Detailed information of component protein


Summary

Component ID T6CP005863
Component protein type TssD
T6SS ID (Type) T6SS00553 insolico (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium str. T000240
Replicon chromosome
Sequence Protein sequence (162 a.a.); Nucleotide sequence (486 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) STMDT12_RS01415
Coordinate (Strand) 318680..319165 (+)
NCBI ID WP_000119443.1
RefSeq NC_016860
Uniprot ID A0A5I5GXK7_SALET, A0A0R9MBY7_SALNE, A0A3V4SNI9_SALET, A0A5X9XBL6_SALET, A0A5I8HRI6_SALET, A0A658INA7_SALNE, A0A3U7ZP19_SALET, A0A5J1MEU9_SALET, A0A3G3E1V0_SALET, A0A3V2W8T7_SALHA, A0A5J2V1J0_SALET, A0A5H8VQP4_SALET, A0A3T3GE73_SALET, A0A3V9CKX5_SALEN, A0A5W4FGC6_SALTM, A0A7U1KSF1_SALET, A0A3V3CMB6_SALET, A0A5I5YZ13_SALET, A0A418Z768_SALET, A0A3V9S5F5_SALET, A0A3Z1TWF3_SALET, A0A659NKJ7_SALET, A0A5W8CCN2_SALET, A0A6C8LMB4_SALET, A0A5W0WR40_SALET, A0A0H3N8E4_SALTS, A0A3V4QGV5_SALET, A0A3Z3GFN9_SALET, A0A4Q8P5U2_SALET, A0A4P7XNK4_SALET, A0A5I4KPC0_SALET, A0A3U8PB28_SALBE, A0A3Y7QVA5_SALDE, A0A3V5TT36_SALSE, A0A4Y5MTH1_SALET, A0A0M0PMZ4_SALER, A0A2T9Q8Z8_SALET, A0A2T8QQ62_SALET, A0A5H7QMM1_SALET, A0A0H3BNU5_SALNS, A0A315GLP3_SALET, A0A6C6ZQA3_SALHS, A0A2R4DDA1_SALET, A0A5H8DZM1_SALET, A0A3W0FE73_SALET, A0A5J1TH92_SALET, A0A5H8FNT9_SALET, A0A6C7I7W1_SALTD, A0A605YLE1_SALET, A0A5H8HCD1_SALBL, A0A3V7I8V8_SALET, A0A5W3E0X3_SALAN, A0A0F6AX81_SALT1, A0A3V6WZN6_SALET, A0A3V4CU06_SALIN, A0A6C8G560_SALIN, A0A3T3EXA4_SALMU, A0A3V4QDJ2_SALTH, A0A265B9N7_SALET, A0A5I6QGW9_SALET, A0A3U8IVC3_SALET, H9L4J8_SALTM, E8XIU4_SALT4, A0A5H6FJ66_SALET, A0A751ZZ73_SALDU, A0A6C7AGX7_SALTU, Q93IS3_SALTY
KEGG ID see:SNSL254_A0305, seb:STM474_0291, seo:STM14_0327, seni:CY43_01395, sej:STMUK_0282, sev:STMMW_02841, stm:STM0279, sey:SL1344_0274, seh:SeHA_C0317
PDB ID 5XEU
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 2e-38 6..136
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
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  Protein sequence: 162 a.a.    

>T6CP005863 NC_016860:318680-319165 [Salmonella enterica subsp. enterica serovar Typhimurium str.] [TssD]
MSYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLSFEHYIDRASPNLFKYCSSGKHIP
QAILVMRKAGGNPLEYLKYTFTDLIIAMVSPSGSQGGEIASRESIELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE
I*

  Nucleotide sequence: 486 bp    

>T6CP005863 NC_016860:318680-319165 [Salmonella enterica subsp. enterica serovar Typhimurium str.] [TssD]
ATGTCTTATGACATTTTTCTGAAAATTGACGGCATTGACGGCGAGTCAATGGATGACAAACACAAAAATGAAATTGAAGT
ACTGAGCTGGCGCTGGAATATTCATCAGGAATCCACCATGCACGCCGGTAGCGGTCTCGGTTCCGGTAAGGTCTCCGTCA
CTAATCTTTCATTTGAACATTACATCGATCGCGCCAGCCCGAACCTGTTCAAATACTGCTCTTCCGGTAAGCACATTCCG
CAGGCCATTCTGGTTATGCGTAAGGCTGGCGGCAATCCGCTGGAGTACCTCAAGTACACTTTCACAGATCTGATTATTGC
AATGGTATCGCCCAGCGGAAGCCAGGGAGGGGAAATTGCGTCTCGCGAATCAATTGAACTCTCCTTCAGCACCGTGAAGC
AGGAATACGTGGTGCAGAACCAGCAGGGTGGCAGCGGCGGCACCATCACCGCAGGCTACGACTTCAAGGCCAACAAAGAA
ATTTAA