Detailed information of component protein


Summary

Component ID T6CP005855
Component protein type TssA
T6SS ID (Type) T6SS00553 insolico (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium str. T000240
Replicon chromosome
Sequence Protein sequence (352 a.a.); Nucleotide sequence (1056 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) STMDT12_RS01345
Coordinate (Strand) 304666..305721 (-)
NCBI ID WP_000367626.1
RefSeq NC_016860
Uniprot ID A0A5T7ZW18_SALNE, M7RGD6_SALDU, A0A5I8HS42_SALET, A0A5I5T3T4_SALET, A0A4Q8S910_SALHA, A0A3V2G340_SALET, A0A3V7LQB6_SALEN, A0A5Z6QP47_SALTM, A0A0H3N9G6_SALTS, A0A735AUR7_SALET, A0A4P9T1N7_SALET, A0A0W4I8F6_SALER, A0A2T8QSD7_SALET, A0A6C7A2Y0_SALDC, A0A315GLR3_SALET, A0A2R4DDE4_SALET, A0A6C7I9S4_SALTD, A0A0F6AX67_SALT1, A0A3Y3IMN4_SALET, A0A3R0D589_SALIN, A0A3V2ZH51_SALET, A0A3U8MRF8_SALET, H9L4K7_SALTM, E8XIT0_SALT4, A0A3T3IK52_SALDU, A0A3Z6P2Q2_SALTU, Q93IT5_SALTY
KEGG ID sev:STMMW_02641, stm:STM0266, sed:SeD_A0289, sey:SL1344_0260, seo:STM14_0313, seb:STM474_0277, seni:CY43_01335, sej:STMUK_0268
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 8.3e-31 7..136
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 352 a.a.    

>T6CP005855 NC_016860:c305721-304666 [Salmonella enterica subsp. enterica serovar Typhimurium str.] [TssA]
MDMSLTKPVSAEQPCGPDPEYDPEYLLLFSRAAPQAEAQYGDFVSTPEAVNWPEIERDARRLLTRSKDIRVLILLLRSRI
QQAGAQGLAEMLTQLAELSVIWSDALHPQLLTGEGASAESIEDASLARSNALAALLDHEGVMADIRGITLSNSAALRLQV
RDVERALSAPRPADALAPESVRQQLADLEARGALPLAAFREAQESAERLQVWARETLGDLAPDFSRLRQLLALLPDVVQT
TTPEIPPSPAPVPDPAGTVMDNAVPARAEDVPPVNAPPGISLPHNAEPGPIRDRNDALERLRCIRRWFESSEPSSPTIPL
LRQAERLVGKRFSEVINEIPVELLEKWDALE*

  Nucleotide sequence: 1056 bp    

>T6CP005855 NC_016860:c305721-304666 [Salmonella enterica subsp. enterica serovar Typhimurium str.] [TssA]
ATGGACATGTCCCTGACTAAACCGGTAAGCGCGGAACAACCCTGCGGCCCCGATCCGGAGTACGATCCGGAATACCTGCT
GCTGTTCAGCCGCGCCGCCCCCCAGGCGGAGGCGCAATATGGTGATTTTGTCAGTACGCCGGAAGCCGTGAACTGGCCGG
AAATTGAACGTGATGCGCGCCGTCTGCTCACGCGCAGTAAGGATATCCGGGTGTTGATCCTGCTGCTGCGCAGTCGCATC
CAGCAGGCTGGCGCACAGGGACTGGCGGAAATGCTCACACAACTGGCAGAACTGAGCGTAATCTGGTCTGATGCACTCCA
TCCACAGCTGCTTACCGGCGAAGGCGCATCCGCAGAATCTATTGAAGATGCGTCGCTGGCGCGCAGTAATGCCCTGGCGG
CGCTGCTGGATCACGAAGGCGTGATGGCGGACATTCGCGGTATTACGCTGTCAAACAGTGCCGCCCTGCGCCTACAGGTA
CGGGATGTGGAGCGCGCGTTATCCGCTCCCCGCCCGGCTGATGCGCTGGCCCCCGAATCCGTCCGCCAGCAACTGGCCGA
CCTCGAAGCCCGTGGGGCATTACCGCTGGCGGCGTTTCGCGAAGCGCAGGAAAGCGCAGAACGCCTGCAAGTGTGGGCGC
GTGAGACATTAGGCGATCTGGCTCCAGATTTTTCACGCCTGCGGCAGTTGTTAGCGCTGCTGCCTGACGTGGTACAGACA
ACCACACCGGAAATCCCTCCGTCGCCAGCGCCAGTGCCAGACCCCGCAGGCACGGTTATGGATAATGCCGTTCCGGCACG
GGCAGAGGATGTGCCGCCTGTCAACGCGCCACCCGGTATATCCCTCCCACACAATGCTGAACCGGGGCCAATTCGCGATC
GTAATGATGCGCTGGAACGCCTGCGGTGCATTCGTCGCTGGTTTGAGAGCAGTGAACCCAGTAGCCCGACCATCCCACTG
TTACGCCAGGCTGAAAGACTGGTGGGAAAACGGTTCTCGGAGGTGATCAATGAGATCCCGGTGGAGTTGCTGGAGAAGTG
GGATGCCCTGGAGTGA