Detailed information of component protein


Summary

Component ID T6CP005866
Component protein type TssL
T6SS ID (Type) T6SS00553 insolico (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium str. T000240
Replicon chromosome
Sequence Protein sequence (435 a.a.); Nucleotide sequence (1305 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) STMDT12_RS01430
Coordinate (Strand) 321112..322416 (+)
NCBI ID WP_000132483.1
RefSeq NC_016860
Uniprot ID A0A3V2JQ41_SALNE, A0A5I1GE33_SALET, A0A5X7WM24_SALMO, A0A3V5VSD0_SALET, V7IK55_SALET, A0A658IDB7_SALNE, A0A3V9PSL2_SALET, A0A5I5T4T9_SALET, A0A3G3E3X5_SALET, A0A4Q8S578_SALHA, A0A5H3KKQ9_SALET, A0A5J1UY04_SALET, A0A3Z2NTI4_SALEN, A0A606SZP8_SALTM, A0A5I3TX12_SALET, A0A3V3CM97_SALET, A0A5I1NBV3_SALET, A0A418Z791_SALET, A0A5V7H2K8_SALET, A0A3Z1TWQ6_SALET, A0A5X5NIM8_SALET, A0A5H6P1B0_SALET, A0A6C8LKM8_SALET, A0A0H3N7X6_SALTS, A0A3V4QGH3_SALET, A0A3Z6QSJ2_SALET, A0A736KSX3_SALET, A0A4P9SZI5_SALET, A0A5I4KMN1_SALET, A0A5V6HGH0_SALET, A0A615FV28_SALDE, A0A3W0KDA5_SALON, A0A3V9FS23_SALSE, A0A4Y6MHI9_SALET, A0A0M0PT45_SALER, A0A0H2WRW4_SALPA, A0A603MUE0_SALET, A0A5X1VYB0_SALET, A0A2T8QQ45_SALET, A0A3T2WC79_SALET, A0A622LIX9_SALET, A0A0N1QXK4_SALSV, A0A315GLS3_SALET, A0A5C5HAN1_SALET, A0A3W0FEJ3_SALET, A0A5I9SC14_SALET, A0A5I5FWN9_SALET, A0A5I3QIL6_SALPT, A0A6C7I4S7_SALPK, A0A6C7I6S4_SALTD, A0A605YMH8_SALET, A0A3V7I8W2_SALET, A0A5W3E0G5_SALAN, A0A0F6AX84_SALT1, A0A3Y2Z2L0_SALET, A0A3U9DIV0_SALIN, A0A625ANZ1_SALMU, A0A5W9CSQ1_SALRU, A0A3V6BQF1_SALTH, A0A5I2L5L8_SALET, A0A3U8MRA4_SALET, A0A745GPA5_SALTI, H9L4F7_SALTM, E8XIU7_SALT4, A0A2T8WWM6_SALET, A0A752A2V5_SALDU, A0A3Z2FA01_SALTU, Q93IS0_SALTY
KEGG ID sew:SeSA_A0314, sey:SL1344_0277, sek:SSPA2317, stm:STM0282, spt:SPA2482, sej:STMUK_0285, seni:CY43_01410, sev:STMMW_02871, seb:STM474_0294, seo:STM14_0330
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 3.2e-59 63..265
OmpA PF00691.22 5.3e-16 328..426
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 435 a.a.    

>T6CP005866 NC_016860:321112-322416 [Salmonella enterica subsp. enterica serovar Typhimurium str.] [TssL]
MTDSTLTPPAADMMSFLSTTPEHKDSEYETPVHTSQRTELNVIVEDGPDSKLRLAEISAAANPLLAAARPLLCALAAMPA
KLDAALVEPYRNLLVREMHLYQTLCDQANLRREHVLAVRYCLCTALDEAANNTTWGRRGVWAGKSLLVTFHGESEGGIKL
FQIIGRLAASFQEHGNVLEVIYHLLGLGFEGRYSVQPDGRKQLDNIRQQLLTQLSQRRDPVMPALSPDFQGAISGRLRRM
RRVPVWLSAGIALLAMLTLFGLYSHRMDVQTVTVQQHIDAIGIKLPPPPVPVHKLRLKILLANEIARGLLTVDEDDQHSR
VVFRGDAMFVPGQKTVSDAIRPVINKAAREIARVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAG
RVHIVGKGDTVPVADNGSKAGRAKNRRVEILVVE*

  Nucleotide sequence: 1305 bp    

>T6CP005866 NC_016860:321112-322416 [Salmonella enterica subsp. enterica serovar Typhimurium str.] [TssL]
ATGACAGACAGTACCCTGACGCCGCCAGCGGCGGATATGATGTCCTTTTTGTCCACCACGCCGGAACATAAGGACAGTGA
ATATGAAACGCCGGTACACACCAGCCAGCGCACGGAACTCAATGTCATCGTTGAAGACGGTCCGGACAGCAAACTCCGGC
TGGCTGAAATCAGCGCGGCGGCTAACCCGTTGCTCGCCGCTGCCCGGCCTTTATTGTGCGCTCTCGCAGCCATGCCCGCT
AAACTGGATGCGGCCCTGGTAGAGCCTTACCGTAATCTGCTGGTACGCGAGATGCATCTGTACCAGACATTATGCGATCA
GGCGAACCTGCGGCGCGAGCACGTACTGGCGGTACGTTACTGCCTGTGTACGGCGCTTGATGAAGCCGCCAATAACACAA
CCTGGGGACGGCGCGGCGTCTGGGCCGGAAAAAGCCTGCTGGTAACATTTCATGGTGAAAGCGAAGGCGGGATAAAACTT
TTCCAGATCATCGGGCGTCTGGCGGCCAGCTTCCAGGAGCATGGCAACGTACTGGAGGTTATCTACCACCTGCTGGGGTT
GGGATTTGAAGGCCGCTACAGCGTGCAGCCAGACGGGCGTAAGCAACTGGACAATATTCGCCAGCAACTGCTGACACAGC
TTTCACAGCGTCGCGATCCGGTTATGCCCGCGCTCTCGCCTGACTTTCAGGGGGCGATAAGCGGACGACTGCGGCGGATG
CGCCGGGTGCCGGTCTGGCTGAGCGCCGGGATAGCCCTGTTGGCGATGCTGACGCTGTTTGGCCTTTACAGCCACCGGAT
GGATGTGCAGACCGTCACCGTACAACAGCATATTGATGCGATTGGTATAAAACTGCCGCCGCCGCCTGTGCCGGTTCATA
AGCTGCGGCTGAAAATCCTGCTGGCAAACGAAATCGCCCGTGGCCTGCTGACCGTGGACGAAGATGACCAGCACAGTAGG
GTGGTCTTCCGTGGCGACGCCATGTTTGTGCCGGGACAGAAAACGGTGAGTGACGCAATCCGGCCAGTGATTAACAAAGC
GGCGCGGGAAATCGCCCGCGTGGGCGGCGCAGTCACTGTAACGGGTCACACTGACAGCCAGCCCATTCATTCGGCTGAAT
TCCCATCCAACCTGGTACTGTCGGAAAAACGGGCGGCGGAAGTTGCGGCGTTGCTGACCTCCGGCGGCGTACCTGCCGGA
CGGGTACATATCGTCGGCAAGGGCGATACGGTGCCGGTGGCGGATAACGGCAGTAAAGCCGGGCGGGCGAAAAACCGTCG
GGTGGAAATTCTGGTAGTGGAGTGA