Detailed information of component protein


Summary

Component ID T6CP005865
Component protein type TssK
T6SS ID (Type) T6SS00553 insolico (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium str. T000240
Replicon chromosome
Sequence Protein sequence (448 a.a.); Nucleotide sequence (1344 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) STMDT12_RS01425
Coordinate (Strand) 319772..321115 (+)
NCBI ID WP_000118732.1
RefSeq NC_016860
Uniprot ID A0A5I4V4L4_SALET, A0A0R9NUA6_SALNE, A0A624B4A7_SALMO, A0A3V5VS98_SALET, V7IHI5_SALET, M7S6S3_SALDU, A0A5W7RYF9_SALET, A0A5X3P8E6_SALET, A0A658IDK4_SALNE, A0A5I5T526_SALET, A0A3G3E480_SALET, A0A4Q8S5D3_SALHA, A0A5I1ZV43_SALET, A0A5H9EWM2_SALET, A0A3T3GE84_SALET, A0A3V7LQC0_SALEN, A0A5W0ZNI9_SALTM, A0A7U1KSA9_SALET, A0A3V3U6L3_SALET, A0A5I1N9W7_SALET, A0A2T8L441_SALET, A0A659RW69_SALET, A0A5X5NGG6_SALET, A0A5H6P2C7_SALET, A0A5W0WQT1_SALET, A0A0H3N9I2_SALTS, A0A3V4QG77_SALET, A0A3Z3GFM6_SALET, A0A4Q8P4R7_SALET, A0A735B718_SALET, A0A4P9SZR9_SALET, A0A5I4KPV9_SALET, A0A3U8PAH8_SALBE, A0A3V8R6Z6_SALDE, A0A401AXJ8_SALSE, F5CQ78_SALER, A0A0H2WSR2_SALPA, A0A2T9Q8X6_SALET, A0A2T8QQ36_SALET, A0A5I6BA07_SALET, A0A3T2WDE6_SALET, A0A0H3BS82_SALNS, A0A6C7A1E0_SALDC, A0A315GMF1_SALET, A0A6C6ZME6_SALHS, A0A5I0V5H7_SALET, A0A3W0FE43_SALET, A0A5H9NBJ0_SALPT, A0A6C7I253_SALPK, A0A6C7I7K1_SALTD, A0A6Y0YT74_SALET, A0A5I2K3I8_SALBL, A0A3U5N7F4_SALET, A0A602Q5E0_SALAN, A0A0F6AX83_SALT1, A0A3Z3CAT5_SALET, A0A5W2S4J6_SALET, A0A3V0IDA0_SALIN, A0A3W0RAU9_SALMU, A0A3V6BQ74_SALTH, A0A265B9Z2_SALET, A0A5I6QKH8_SALET, Q83SZ6_SALTI, H9L4F9_SALTM, E8XIU6_SALT4, A0A5H6FK18_SALET, A0A3T3IKD8_SALDU, A0A3Z6P2Q0_SALTU, Q93IS1_SALTY
KEGG ID stt:t2582, sek:SSPA2318, seb:STM474_0293, sey:SL1344_0276, seh:SeHA_C0319, spt:SPA2483, seni:CY43_01405, sed:SeD_A0302, sej:STMUK_0284, seo:STM14_0329, stm:STM0281, see:SNSL254_A0307, sev:STMMW_02861
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2e-135 20..444
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 448 a.a.    

>T6CP005865 NC_016860:319772-321115 [Salmonella enterica subsp. enterica serovar Typhimurium str.] [TssK]
MSWNDRVVWSEGQFLLPQMFQQQERYLEHVMHYRSLPLTPFFWGFSHYNIDGEALNIGKLILKEASGIFPDGTPFNAPDH
TPLPPPLTILPEHLNQQICLAVPVRAPNSEETTFDNNPESLARFSVHEHDIRDANSLGRGAQLLQLSHLRLRLLPEKAVT
GAWIGLPLTRITGLNPDGRIDIDHDLIPPIINYQASSLMCTWLSWINDLIRMRADSLAERLTGSDNHGHEAAEVSDYLLL
QILNRFEPLLTHLAKTPLAPEVLYRYLSELAGELSTYVRPQTRRPAEYKEYKHLTPYAGLKSLVDEVQFLLNAVLIRGAQ
RIELKEGTYGILNAVVAPSDLADFSTLVLAIKASMPTDVLLQHFAAQTKIGPSDRLPELIRSHLPGLALQVLPVPPRQIP
FQAGYIYYDIRREGALWEHIARYGGMAMHTAGEFPGLETELWGVRDK*

  Nucleotide sequence: 1344 bp    

>T6CP005865 NC_016860:319772-321115 [Salmonella enterica subsp. enterica serovar Typhimurium str.] [TssK]
ATGAGCTGGAATGACCGCGTAGTCTGGAGTGAAGGACAATTTTTACTGCCGCAGATGTTTCAGCAGCAAGAGCGTTATCT
GGAACACGTCATGCATTACCGCAGCCTGCCGCTGACCCCCTTTTTCTGGGGATTCAGCCACTACAATATTGATGGCGAAG
CGCTGAACATCGGTAAACTGATACTGAAAGAGGCATCAGGGATTTTTCCTGACGGCACGCCGTTTAACGCACCGGACCAC
ACCCCGCTGCCGCCGCCACTGACCATTCTGCCGGAGCACCTGAACCAGCAGATTTGTCTGGCGGTACCGGTACGCGCGCC
GAACAGCGAAGAAACCACGTTTGACAATAACCCGGAATCATTGGCGCGTTTCTCGGTACATGAACACGACATCCGCGACG
CCAACTCGCTGGGACGTGGCGCGCAGTTATTACAGCTCAGTCATCTGCGCCTGCGGCTGCTGCCGGAAAAGGCGGTGACG
GGCGCCTGGATTGGCCTGCCGTTGACCCGCATCACCGGGTTGAACCCTGACGGGCGGATAGATATCGACCACGACCTGAT
CCCGCCCATCATTAATTATCAGGCCAGTTCACTGATGTGTACCTGGCTGTCGTGGATCAACGATCTCATCCGGATGCGGG
CCGATTCGCTGGCGGAACGGCTGACCGGCAGCGACAACCACGGCCATGAAGCAGCGGAGGTCTCCGATTACCTGCTGCTG
CAAATTCTCAATCGCTTTGAGCCGCTGCTGACTCACCTGGCGAAAACCCCGCTGGCCCCGGAGGTGCTGTACCGCTACCT
GTCCGAACTGGCCGGGGAACTCTCCACCTATGTGCGTCCACAAACGCGACGGCCCGCTGAATACAAAGAGTACAAACACC
TGACGCCCTATGCCGGGTTGAAATCGCTGGTTGATGAGGTGCAGTTCCTGCTGAACGCGGTACTGATCCGGGGCGCGCAG
CGCATCGAGCTGAAAGAGGGGACTTACGGCATCCTGAATGCGGTGGTGGCCCCTTCCGATCTTGCCGATTTCAGCACGCT
GGTACTGGCGATAAAGGCTTCAATGCCGACCGATGTGCTACTGCAACATTTTGCCGCCCAGACCAAAATCGGGCCATCCG
ATCGCCTGCCGGAACTGATCCGCTCGCATCTGCCGGGGCTGGCTTTGCAGGTTCTGCCTGTACCACCGCGCCAAATCCCG
TTTCAGGCCGGATACATCTATTACGACATCCGCCGCGAGGGAGCATTGTGGGAACACATTGCCCGTTACGGCGGGATGGC
CATGCATACCGCCGGGGAATTTCCGGGGCTGGAGACAGAACTGTGGGGAGTGCGCGATAAATGA