Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00223  |
| T6SS type | Type i3 |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon (RefSeq) | chromosome (NC_009708) |
| Location | 1585414..1618917 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagJ | TagL | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| YPSIP31758_RS08145 (mltB) | 1581625..1582719 | + | 1095 | WP_011192719.1 | lytic murein transglycosylase B | ||
| YPSIP31758_RS08150 | 1583960..1584562 | + | 603 | WP_011192718.1 | LuxR family transcriptional regulator | ||
| YPSIP31758_RS08155 | 1584935..1585417 | - | 483 | WP_002215321.1 | DcrB-related protein | ||
| T6CP011609 | TagL | YPSIP31758_RS08160 | 1585414..1587096 | - | 1683 | WP_012104863.1 | OmpA family protein |
| YPSIP31758_RS08165 | 1587097..1587798 | - | 702 | WP_012104864.1 | hypothetical protein | ||
| YPSIP31758_RS08170 | 1587795..1589132 | - | 1338 | WP_012104865.1 | glycosyl transferase | ||
| YPSIP31758_RS08175 | 1589172..1590203 | - | 1032 | WP_011192714.1 | fimbrial protein | ||
| T6CP002219 | TssA | YPSIP31758_RS08180 | 1590210..1591403 | - | 1194 | WP_011192713.1 | ImpA family type VI secretion system protein |
| T6CP002220 | TssG | YPSIP31758_RS08185 (tssG) | 1591502..1592527 | - | 1026 | WP_011192712.1 | type VI secretion system baseplate subunit TssG |
| T6CP002221 | TssF | YPSIP31758_RS08190 (tssF) | 1592527..1594407 | - | 1881 | WP_002211582.1 | type VI secretion system baseplate subunit TssF |
| T6CP002222 | TssH | YPSIP31758_RS08195 (tssH) | 1595191..1597848 | + | 2658 | WP_012104866.1 | type VI secretion system ATPase TssH |
| YPSIP31758_RS08200 | 1598059..1598604 | + | 546 | WP_012104867.1 | type 1 fimbrial protein | ||
| YPSIP31758_RS08205 | 1598761..1599522 | + | 762 | WP_012104868.1 | fimbria/pilus periplasmic chaperone | ||
| YPSIP31758_RS23055 | 1599650..1602322 | + | 2673 | WP_071838952.1 | fimbrial biogenesis outer membrane usher protein | ||
| YPSIP31758_RS08220 | 1602307..1602915 | + | 609 | WP_011192708.1 | type 1 fimbrial protein | ||
| T6CP002223 | TssB | YPSIP31758_RS08225 (tssB) | 1603021..1603545 | + | 525 | WP_002211575.1 | type VI secretion system contractile sheath small subunit |
| T6CP002224 | TssC | YPSIP31758_RS08230 (tssC) | 1603569..1605071 | + | 1503 | WP_002211574.1 | type VI secretion system contractile sheath large subunit |
| T6CP002225 | TssD | YPSIP31758_RS08235 | 1605404..1605889 | + | 486 | WP_002211573.1 | type VI secretion system tube protein Hcp |
| T6CP002226 | TssJ | YPSIP31758_RS08240 (tssJ) | 1606163..1606702 | + | 540 | WP_002211572.1 | type VI secretion system lipoprotein TssJ |
| T6CP002227 | TssK | YPSIP31758_RS08245 (tssK) | 1606706..1608055 | + | 1350 | WP_002211571.1 | type VI secretion system baseplate subunit TssK |
| T6CP002228 | TssL | YPSIP31758_RS08250 (tssL) | 1608052..1609428 | + | 1377 | WP_012104870.1 | type VI secretion system protein TssL, long form |
| T6CP002229 | TssM | YPSIP31758_RS08255 (tssM) | 1609437..1613264 | + | 3828 | WP_011192705.1 | type VI secretion system membrane subunit TssM |
| T6CP002230 | TssI | YPSIP31758_RS08260 | 1613591..1616341 | + | 2751 | WP_012104871.1 | type VI secretion system Vgr family protein |
| T6CP011608 | PAAR | YPSIP31758_RS08265 | 1616440..1616700 | + | 261 | WP_002209684.1 | PAAR domain-containing protein |
| YPSIP31758_RS08270 | 1616706..1617548 | + | 843 | WP_002354537.1 | TagK domain-containing protein | ||
| T6CP012748 | TagJ | YPSIP31758_RS08275 | 1617568..1618374 | + | 807 | WP_012104872.1 | ImpE family protein |
| T6CP002231 | TssE | YPSIP31758_RS08280 | 1618438..1618917 | + | 480 | WP_002209686.1 | type VI secretion system baseplate subunit TssE |
| YPSIP31758_RS08285 | 1618942..1619289 | + | 348 | WP_002209687.1 | hypothetical protein | ||
| YPSIP31758_RS08290 | 1619364..1619705 | - | 342 | WP_002209688.1 | alkylphosphonate utilization protein | ||
| YPSIP31758_RS08295 | 1620081..1622120 | - | 2040 | WP_012413816.1 | DUF2207 domain-containing protein | ||
| YPSIP31758_RS08300 | 1622125..1622667 | - | 543 | WP_012104874.1 | LemA family protein | ||
| YPSIP31758_RS23060 | 1623271..1623636 | + | 366 | pseudogene | tyrosine-type recombinase/integrase |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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