Detailed information of component protein
Summary
| Component ID | T6CP012748 |
| Component protein type | TagJ |
| T6SS ID (Type) | T6SS00223  (Type i3) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (269 a.a.); Nucleotide sequence (807 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS08275 |
| Coordinate (Strand) | 1617568..1618374 (+) |
| NCBI ID | WP_012104872.1 |
| RefSeq | NC_009708 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ImpE | PF07024.15 | 2.5e-41 | 145..261 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-268 | MNTTNLTELLKSASLTEMLADVIATIKAKPTDTDTRELLFKLYCIDGSWQKALLQLETLTQLLPEFTKQAELYKNLILSEKMRDEVLAGKRSPGTLGNDLPEWVALLQQANQLHHDGDHQQSEALREQALQQAPESIGESAATGCFAWIADSDGRMGPVCEFISAGGYRWIPFAEIQSLTVSKPKNITDLIWAPAQVKVKDKVWYGYIPARYPLTPETDNETKLGLKTEWHQPTDSLYIGAGRKMFITDQGEHALFDIEEIVFEIDCV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9731 | - | - |
Protein sequence: 269 a.a.
>T6CP012748 NC_009708:1617568-1618374 [Yersinia pseudotuberculosis IP 31758] [TagJ]
MNTTNLTELLKSASLTEMLADVIATIKAKPTDTDTRELLFKLYCIDGSWQKALLQLETLTQLLPEFTKQAELYKNLILSE
KMRDEVLAGKRSPGTLGNDLPEWVALLQQANQLHHDGDHQQSEALREQALQQAPESIGESAATGCFAWIADSDGRMGPVC
EFISAGGYRWIPFAEIQSLTVSKPKNITDLIWAPAQVKVKDKVWYGYIPARYPLTPETDNETKLGLKTEWHQPTDSLYIG
AGRKMFITDQGEHALFDIEEIVFEIDCV*
MNTTNLTELLKSASLTEMLADVIATIKAKPTDTDTRELLFKLYCIDGSWQKALLQLETLTQLLPEFTKQAELYKNLILSE
KMRDEVLAGKRSPGTLGNDLPEWVALLQQANQLHHDGDHQQSEALREQALQQAPESIGESAATGCFAWIADSDGRMGPVC
EFISAGGYRWIPFAEIQSLTVSKPKNITDLIWAPAQVKVKDKVWYGYIPARYPLTPETDNETKLGLKTEWHQPTDSLYIG
AGRKMFITDQGEHALFDIEEIVFEIDCV*
Nucleotide sequence: 807 bp
>T6CP012748 NC_009708:1617568-1618374 [Yersinia pseudotuberculosis IP 31758] [TagJ]
ATGAATACCACGAATTTAACTGAGTTATTAAAAAGCGCGTCTTTAACCGAAATGCTGGCCGATGTCATTGCTACGATAAA
AGCTAAACCAACGGACACCGATACGCGAGAGCTGTTATTCAAACTCTATTGTATTGATGGTTCATGGCAAAAAGCCCTAT
TGCAGCTTGAAACATTGACACAGCTTTTACCTGAGTTCACCAAACAGGCTGAACTCTATAAAAATCTGATATTGAGTGAG
AAAATGCGTGATGAAGTGCTGGCAGGCAAACGCAGCCCTGGTACATTGGGTAACGACCTGCCTGAATGGGTAGCCTTGTT
GCAACAAGCTAATCAACTCCACCATGATGGCGATCATCAGCAAAGTGAGGCCCTCCGTGAACAGGCTCTGCAACAGGCAC
CGGAAAGTATCGGAGAGAGTGCTGCGACAGGCTGCTTCGCTTGGATTGCTGACAGTGATGGGCGCATGGGGCCTGTTTGT
GAGTTTATTAGCGCCGGCGGTTACCGTTGGATCCCGTTTGCAGAGATACAATCACTCACTGTTTCCAAACCTAAAAATAT
TACAGACCTGATATGGGCGCCGGCACAGGTTAAAGTAAAGGATAAAGTTTGGTACGGTTATATACCTGCCCGCTATCCAC
TGACACCTGAAACAGACAATGAAACTAAACTGGGTCTTAAAACAGAATGGCATCAACCGACTGACTCACTTTATATTGGG
GCAGGGCGGAAAATGTTTATCACCGACCAAGGTGAGCATGCGCTGTTTGATATTGAAGAGATTGTATTTGAGATAGATTG
TGTTTGA
ATGAATACCACGAATTTAACTGAGTTATTAAAAAGCGCGTCTTTAACCGAAATGCTGGCCGATGTCATTGCTACGATAAA
AGCTAAACCAACGGACACCGATACGCGAGAGCTGTTATTCAAACTCTATTGTATTGATGGTTCATGGCAAAAAGCCCTAT
TGCAGCTTGAAACATTGACACAGCTTTTACCTGAGTTCACCAAACAGGCTGAACTCTATAAAAATCTGATATTGAGTGAG
AAAATGCGTGATGAAGTGCTGGCAGGCAAACGCAGCCCTGGTACATTGGGTAACGACCTGCCTGAATGGGTAGCCTTGTT
GCAACAAGCTAATCAACTCCACCATGATGGCGATCATCAGCAAAGTGAGGCCCTCCGTGAACAGGCTCTGCAACAGGCAC
CGGAAAGTATCGGAGAGAGTGCTGCGACAGGCTGCTTCGCTTGGATTGCTGACAGTGATGGGCGCATGGGGCCTGTTTGT
GAGTTTATTAGCGCCGGCGGTTACCGTTGGATCCCGTTTGCAGAGATACAATCACTCACTGTTTCCAAACCTAAAAATAT
TACAGACCTGATATGGGCGCCGGCACAGGTTAAAGTAAAGGATAAAGTTTGGTACGGTTATATACCTGCCCGCTATCCAC
TGACACCTGAAACAGACAATGAAACTAAACTGGGTCTTAAAACAGAATGGCATCAACCGACTGACTCACTTTATATTGGG
GCAGGGCGGAAAATGTTTATCACCGACCAAGGTGAGCATGCGCTGTTTGATATTGAAGAGATTGTATTTGAGATAGATTG
TGTTTGA