Detailed information of component protein
Summary
| Component ID | T6CP002223 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00223  (Type i3) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (175 a.a.); Nucleotide sequence (525 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS08225 |
| Coordinate (Strand) | 1603021..1603545 (+) |
| NCBI ID | WP_002211575.1 |
| RefSeq | NC_009708 |
| Uniprot ID | Q668S1_YERPS, A0A0U1QVR4_YERP3, A0A0E1NM55_YERPA, A0A0H2YG87_YERPN, A0A0H3B2H9_YERPY, A0A380PEA5_YERPE, A0A0T9JDD6_YERPU |
| KEGG ID | yps:YPTB2666, ypo:BZ17_3972, ypr:BZ20_3543, ypu:BZ21_1963, ypa:YPA_2130, ypi:YpsIP31758_1367, ypy:YPK_1479, ype:YPO2939, ypn:YPN_1442, ypc:BZ23_2247, ypq:DJ40_3877 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 1.4e-56 | 12..162 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-174 | MVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADRKLLDIDIDNFDERMKAMKPRVAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDKSLLTTLASAPKAKQSAVDTPQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9956 | - | - |
Protein sequence: 175 a.a.
>T6CP002223 NC_009708:1603021-1603545 [Yersinia pseudotuberculosis IP 31758] [TssB]
MVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADRKLLDIDIDNFDERMKAMKPR
VAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDKSLLTTLA
SAPKAKQSAVDTPQ*
MVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADRKLLDIDIDNFDERMKAMKPR
VAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDKSLLTTLA
SAPKAKQSAVDTPQ*
Nucleotide sequence: 525 bp
>T6CP002223 NC_009708:1603021-1603545 [Yersinia pseudotuberculosis IP 31758] [TssB]
ATGGTTAGCAAAAGTAATTCTCAAAAGTTTATTGCTCGAAACCGAGCGCCACGCGTGCAGATTGAATACGATGTGGAAAT
ATACGGTAGTGAAAAGAAGGTTGAATTACCTTTCGTTATGGGGGTATTAGCAGATTTATCCGGTAAACCTCTTGAGCCTT
TACCTTCAGTCGCTGACAGAAAACTGTTAGATATCGATATTGATAATTTCGATGAGCGCATGAAAGCAATGAAACCACGT
GTTGCATTCGCCGTGCTGAATACATTGACTGGGGAAGGCCAGTTAATGGTCGATATTACGTTTGAGAGTATGGATGATTT
CTCTCCTGACGCTATCGCGAAAAAAGTTGATTCATTGTCTCAATTATTAGATGCCCGAACTCAACTTGCCAACTTGCAGA
CTTATATGGATGGTAAGGCGGGTGCTGAGGAATTAGTCATGAAATTGCTGAAAGACAAATCATTACTGACAACGCTTGCA
TCCGCACCGAAAGCAAAACAATCCGCTGTTGATACTCCACAGTAA
ATGGTTAGCAAAAGTAATTCTCAAAAGTTTATTGCTCGAAACCGAGCGCCACGCGTGCAGATTGAATACGATGTGGAAAT
ATACGGTAGTGAAAAGAAGGTTGAATTACCTTTCGTTATGGGGGTATTAGCAGATTTATCCGGTAAACCTCTTGAGCCTT
TACCTTCAGTCGCTGACAGAAAACTGTTAGATATCGATATTGATAATTTCGATGAGCGCATGAAAGCAATGAAACCACGT
GTTGCATTCGCCGTGCTGAATACATTGACTGGGGAAGGCCAGTTAATGGTCGATATTACGTTTGAGAGTATGGATGATTT
CTCTCCTGACGCTATCGCGAAAAAAGTTGATTCATTGTCTCAATTATTAGATGCCCGAACTCAACTTGCCAACTTGCAGA
CTTATATGGATGGTAAGGCGGGTGCTGAGGAATTAGTCATGAAATTGCTGAAAGACAAATCATTACTGACAACGCTTGCA
TCCGCACCGAAAGCAAAACAATCCGCTGTTGATACTCCACAGTAA