Detailed information of component protein


Summary

Component ID T6CP002224
Component protein type TssC
T6SS ID (Type) T6SS00223 insolico (Type i3)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (501 a.a.); Nucleotide sequence (1503 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS08230
Coordinate (Strand) 1603569..1605071 (+)
NCBI ID WP_002211574.1
RefSeq NC_009708
Uniprot ID A0A0E8XLM4_9GAMM, Q668S2_YERPS, A0A0U1QUJ4_YERP3, A0A0E1NLU4_YERPA, A0A0T9QX22_9GAMM, A0A0H2YHV8_YERPN, A0A0H3B3I3_YERPY, A0A380PGA5_YERPE, A0A0T9JCU8_YERPU
KEGG ID ypc:BZ23_2246, ypq:DJ40_3878, ypn:YPN_1443, yps:YPTB2665, ypu:BZ21_1962, ypi:YpsIP31758_1368, ype:YPO2938, ypa:YPA_2129, ypo:BZ17_3973, ysi:BF17_22810, ypr:BZ20_3544, ypy:YPK_1480
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 9.5e-136 69..372
VipB_2 PF18945.2 1.8e-44 382..493
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-500 MSTQDAKTKQATVASATEYSDFNTLLTKEFKAKSEQTIAAVEGAVKTLAEQALANSVTVSDDAYKSIASIIAEIDRKLSDQINLILHHQEFQSLESAWRGLHYLVNNTETDEKLRLRFLDISKDELRRNMKRYKGVAWDQSPLFKKIYEEEYGQLGGEPYGCLVADYYFDHTAPDVDLLASIGKVAASAHVPFITGAAPSVLQMESWQELSNPRDLTKIFTQNLEYAAWNSLRQSEDSRYIGLAMPRFLSRLPYGINTNPVDAFHFEETTDGADHSKYVWSNAAYAMAVNINRSFKEYGWCTLIRGVESGGVVEGLPCHTFPTDDGGIDMKCPTEIAISDRREAELAKNGFIPLVHRKNTDYAAFIGAQSLQKPAEYYDSDATANANLSARLPYLFACSRFAHYLKCIVRDKIGSFKERDEMQRWLNDWVMNYVDGDPANSSLETKARRPLAAAEVIVEEVEGNPGYYQAKFFLRPHFQLEGLTVSLRMVAKLPSLKDVA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9788 - -


  Protein sequence: 501 a.a.    

>T6CP002224 NC_009708:1603569-1605071 [Yersinia pseudotuberculosis IP 31758] [TssC]
MSTQDAKTKQATVASATEYSDFNTLLTKEFKAKSEQTIAAVEGAVKTLAEQALANSVTVSDDAYKSIASIIAEIDRKLSD
QINLILHHQEFQSLESAWRGLHYLVNNTETDEKLRLRFLDISKDELRRNMKRYKGVAWDQSPLFKKIYEEEYGQLGGEPY
GCLVADYYFDHTAPDVDLLASIGKVAASAHVPFITGAAPSVLQMESWQELSNPRDLTKIFTQNLEYAAWNSLRQSEDSRY
IGLAMPRFLSRLPYGINTNPVDAFHFEETTDGADHSKYVWSNAAYAMAVNINRSFKEYGWCTLIRGVESGGVVEGLPCHT
FPTDDGGIDMKCPTEIAISDRREAELAKNGFIPLVHRKNTDYAAFIGAQSLQKPAEYYDSDATANANLSARLPYLFACSR
FAHYLKCIVRDKIGSFKERDEMQRWLNDWVMNYVDGDPANSSLETKARRPLAAAEVIVEEVEGNPGYYQAKFFLRPHFQL
EGLTVSLRMVAKLPSLKDVA*

  Nucleotide sequence: 1503 bp    

>T6CP002224 NC_009708:1603569-1605071 [Yersinia pseudotuberculosis IP 31758] [TssC]
ATGTCCACTCAAGACGCAAAAACTAAACAAGCTACAGTCGCCAGTGCGACGGAATATAGCGATTTTAATACATTACTGAC
TAAAGAATTTAAAGCGAAGTCTGAGCAGACGATAGCAGCAGTAGAAGGTGCCGTTAAAACGTTGGCTGAGCAAGCGCTGG
CTAATTCGGTCACGGTGTCAGACGATGCTTATAAAAGCATTGCTTCCATTATTGCAGAGATTGATCGCAAGCTATCAGAT
CAGATTAATTTAATTTTGCACCACCAAGAATTCCAGTCTCTGGAAAGCGCATGGCGTGGGCTACACTATTTAGTCAATAA
CACCGAGACTGATGAGAAGTTGAGATTACGTTTCCTCGACATCTCTAAAGATGAATTACGCCGTAACATGAAGCGTTATA
AAGGTGTTGCTTGGGATCAAAGCCCATTATTCAAAAAAATCTATGAAGAAGAATATGGCCAACTGGGTGGCGAACCATAC
GGTTGCCTGGTAGCAGACTATTACTTTGACCATACTGCACCTGACGTTGACTTGTTGGCTTCAATTGGCAAAGTTGCCGC
GTCTGCCCACGTGCCATTTATTACAGGTGCTGCACCGTCTGTGTTGCAAATGGAATCTTGGCAAGAACTGTCAAACCCAC
GTGATTTGACGAAGATCTTCACTCAGAATCTTGAGTATGCCGCATGGAACTCACTGCGTCAGTCTGAAGACTCTCGCTAT
ATCGGCCTGGCGATGCCACGTTTCTTGTCGCGTCTGCCTTATGGGATTAATACCAACCCGGTAGATGCCTTCCATTTTGA
AGAGACGACGGATGGCGCGGATCACAGCAAATATGTGTGGTCAAATGCGGCTTATGCGATGGCTGTTAACATCAACCGAT
CTTTCAAAGAGTATGGCTGGTGTACGCTGATTCGTGGGGTGGAAAGTGGTGGTGTTGTTGAAGGCCTGCCATGCCATACC
TTCCCGACGGATGACGGCGGTATTGATATGAAATGCCCAACAGAAATCGCTATTTCTGACCGTCGTGAAGCGGAACTGGC
CAAGAATGGCTTTATTCCACTGGTTCACAGAAAGAATACTGATTACGCGGCATTCATTGGCGCGCAGTCCCTGCAAAAAC
CTGCAGAATATTACGATTCGGATGCAACGGCGAACGCCAACCTTTCCGCTCGTCTGCCATACCTGTTTGCTTGTTCACGT
TTTGCACATTATCTGAAGTGCATCGTGCGTGACAAAATCGGCTCTTTCAAAGAGCGTGATGAGATGCAACGTTGGTTGAA
TGATTGGGTGATGAACTATGTTGATGGTGACCCGGCTAATTCTTCCCTGGAAACTAAAGCGCGCCGTCCTTTAGCCGCTG
CTGAAGTGATTGTTGAAGAAGTTGAAGGTAACCCTGGTTACTATCAGGCTAAATTCTTCTTACGCCCTCATTTCCAGTTA
GAAGGTTTGACAGTCTCCCTGCGTATGGTTGCTAAACTGCCTTCGCTGAAAGACGTAGCATAA