Detailed information of component protein


Summary

Component ID T6CP002231
Component protein type TssE
T6SS ID (Type) T6SS00223 insolico (Type i3)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (160 a.a.); Nucleotide sequence (480 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) YPSIP31758_RS08280
Coordinate (Strand) 1618438..1618917 (+)
NCBI ID WP_002209686.1
RefSeq NC_009708
Uniprot ID A0A0E8XPJ3_9GAMM, Q668T2_YERPS, A0A0U1R3C0_YERP3, A0A0H2YI41_YERPN, A0A0H3B3J0_YERPY, A0A2U2H0H3_YERPE, A0A0T9JCT6_YERPU
KEGG ID ypy:YPK_1490, ype:YPO2728, ypq:DJ40_3888, ypu:BZ21_1952, yps:YPTB2655, ypn:YPN_2219, ypc:BZ23_2236, ypr:BZ20_3554, ypo:BZ17_3983, ypi:YpsIP31758_1378
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 1.9e-16 37..136

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-159 MEKKKQFLPALLERLLDDEPKKHIEPHDKFFYDSRTMRKLVQRNISEILNNANIEDRLDPQRHKWVATSVLNYGISPLVGLYAVPHNWATIERIIREAIIRFEPRIMAESLVVSQQLQARNGIIQFEIRGLIKWNPHPIDLCIEGAYDVETDNAELRAR



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9924 - -



  Protein sequence: 160 a.a.    

>T6CP002231 NC_009708:1618438-1618917 [Yersinia pseudotuberculosis IP 31758] [TssE]
MEKKKQFLPALLERLLDDEPKKHIEPHDKFFYDSRTMRKLVQRNISEILNNANIEDRLDPQRHKWVATSVLNYGISPLVG
LYAVPHNWATIERIIREAIIRFEPRIMAESLVVSQQLQARNGIIQFEIRGLIKWNPHPIDLCIEGAYDVETDNAELRAR*

  Nucleotide sequence: 480 bp    

>T6CP002231 NC_009708:1618438-1618917 [Yersinia pseudotuberculosis IP 31758] [TssE]
ATGGAAAAGAAAAAACAGTTTTTACCGGCGTTGTTAGAGCGTTTACTCGATGATGAGCCTAAAAAGCATATTGAGCCTCA
CGATAAATTCTTTTATGACTCACGGACGATGCGGAAATTGGTACAACGTAATATTTCAGAGATATTAAATAATGCCAATA
TTGAAGACCGGTTGGATCCGCAGCGTCATAAATGGGTAGCGACGTCGGTCTTAAACTATGGTATTTCACCCCTGGTCGGG
CTTTATGCCGTGCCGCATAATTGGGCGACTATTGAACGAATTATCAGAGAGGCCATTATCCGTTTTGAACCACGGATAAT
GGCGGAATCTCTCGTTGTCAGCCAGCAACTCCAGGCCAGGAATGGCATTATACAGTTTGAGATTAGGGGGTTAATCAAAT
GGAACCCGCACCCTATCGATCTTTGTATTGAAGGTGCCTATGACGTTGAGACGGATAACGCAGAACTACGCGCCCGTTGA