Detailed information of component protein
Summary
| Component ID | T6CP002231 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00223  (Type i3) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (160 a.a.); Nucleotide sequence (480 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS08280 |
| Coordinate (Strand) | 1618438..1618917 (+) |
| NCBI ID | WP_002209686.1 |
| RefSeq | NC_009708 |
| Uniprot ID | A0A0E8XPJ3_9GAMM, Q668T2_YERPS, A0A0U1R3C0_YERP3, A0A0H2YI41_YERPN, A0A0H3B3J0_YERPY, A0A2U2H0H3_YERPE, A0A0T9JCT6_YERPU |
| KEGG ID | ypy:YPK_1490, ype:YPO2728, ypq:DJ40_3888, ypu:BZ21_1952, yps:YPTB2655, ypn:YPN_2219, ypc:BZ23_2236, ypr:BZ20_3554, ypo:BZ17_3983, ypi:YpsIP31758_1378 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 1.9e-16 | 37..136 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-159 | MEKKKQFLPALLERLLDDEPKKHIEPHDKFFYDSRTMRKLVQRNISEILNNANIEDRLDPQRHKWVATSVLNYGISPLVGLYAVPHNWATIERIIREAIIRFEPRIMAESLVVSQQLQARNGIIQFEIRGLIKWNPHPIDLCIEGAYDVETDNAELRAR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9924 | - | - |
Protein sequence: 160 a.a.
>T6CP002231 NC_009708:1618438-1618917 [Yersinia pseudotuberculosis IP 31758] [TssE]
MEKKKQFLPALLERLLDDEPKKHIEPHDKFFYDSRTMRKLVQRNISEILNNANIEDRLDPQRHKWVATSVLNYGISPLVG
LYAVPHNWATIERIIREAIIRFEPRIMAESLVVSQQLQARNGIIQFEIRGLIKWNPHPIDLCIEGAYDVETDNAELRAR*
MEKKKQFLPALLERLLDDEPKKHIEPHDKFFYDSRTMRKLVQRNISEILNNANIEDRLDPQRHKWVATSVLNYGISPLVG
LYAVPHNWATIERIIREAIIRFEPRIMAESLVVSQQLQARNGIIQFEIRGLIKWNPHPIDLCIEGAYDVETDNAELRAR*
Nucleotide sequence: 480 bp
>T6CP002231 NC_009708:1618438-1618917 [Yersinia pseudotuberculosis IP 31758] [TssE]
ATGGAAAAGAAAAAACAGTTTTTACCGGCGTTGTTAGAGCGTTTACTCGATGATGAGCCTAAAAAGCATATTGAGCCTCA
CGATAAATTCTTTTATGACTCACGGACGATGCGGAAATTGGTACAACGTAATATTTCAGAGATATTAAATAATGCCAATA
TTGAAGACCGGTTGGATCCGCAGCGTCATAAATGGGTAGCGACGTCGGTCTTAAACTATGGTATTTCACCCCTGGTCGGG
CTTTATGCCGTGCCGCATAATTGGGCGACTATTGAACGAATTATCAGAGAGGCCATTATCCGTTTTGAACCACGGATAAT
GGCGGAATCTCTCGTTGTCAGCCAGCAACTCCAGGCCAGGAATGGCATTATACAGTTTGAGATTAGGGGGTTAATCAAAT
GGAACCCGCACCCTATCGATCTTTGTATTGAAGGTGCCTATGACGTTGAGACGGATAACGCAGAACTACGCGCCCGTTGA
ATGGAAAAGAAAAAACAGTTTTTACCGGCGTTGTTAGAGCGTTTACTCGATGATGAGCCTAAAAAGCATATTGAGCCTCA
CGATAAATTCTTTTATGACTCACGGACGATGCGGAAATTGGTACAACGTAATATTTCAGAGATATTAAATAATGCCAATA
TTGAAGACCGGTTGGATCCGCAGCGTCATAAATGGGTAGCGACGTCGGTCTTAAACTATGGTATTTCACCCCTGGTCGGG
CTTTATGCCGTGCCGCATAATTGGGCGACTATTGAACGAATTATCAGAGAGGCCATTATCCGTTTTGAACCACGGATAAT
GGCGGAATCTCTCGTTGTCAGCCAGCAACTCCAGGCCAGGAATGGCATTATACAGTTTGAGATTAGGGGGTTAATCAAAT
GGAACCCGCACCCTATCGATCTTTGTATTGAAGGTGCCTATGACGTTGAGACGGATAACGCAGAACTACGCGCCCGTTGA