Detailed information of component protein
Summary
| Component ID | T6CP011608 |
| Component protein type | PAAR |
| T6SS ID (Type) | T6SS00223  (Type i3) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (87 a.a.); Nucleotide sequence (261 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS08265 |
| Coordinate (Strand) | 1616440..1616700 (+) |
| NCBI ID | WP_002209684.1 |
| RefSeq | NC_009708 |
| Uniprot ID | Q668S9_YERPS, A0A0U1QTT9_YERP3, A0A0E1NU62_YERPA, A0A0H3B0B0_YERPY, A0A3G5KMZ3_YERPU |
| KEGG ID | ypr:BZ20_3551, ypy:YPK_1487, ypo:BZ17_3980, yps:YPTB2658, ypc:BZ23_2239, ypu:BZ21_1955, ypa:YPA_2119, ypi:YpsIP31758_1375, ypq:DJ40_3885 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| PAAR_motif | PF05488.15 | 2.5e-11 | 8..76 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-86 | MFSAAKMGDVTSDGGAICTGSCDVFINNIPASKLGSGATSTLVGLTALVTGSGTVFINNCPATRCSDKTGCGSVIVTGSPNVFIGN |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.7610 | - | - |
Protein sequence: 87 a.a.
>T6CP011608 NC_009708:1616440-1616700 [Yersinia pseudotuberculosis IP 31758] [PAAR]
MFSAAKMGDVTSDGGAICTGSCDVFINNIPASKLGSGATSTLVGLTALVTGSGTVFINNCPATRCSDKTGCGSVIVTGSP
NVFIGN*
MFSAAKMGDVTSDGGAICTGSCDVFINNIPASKLGSGATSTLVGLTALVTGSGTVFINNCPATRCSDKTGCGSVIVTGSP
NVFIGN*
Nucleotide sequence: 261 bp
>T6CP011608 NC_009708:1616440-1616700 [Yersinia pseudotuberculosis IP 31758] [PAAR]
ATGTTCAGTGCGGCAAAAATGGGCGATGTGACCAGCGATGGTGGTGCGATATGTACCGGTTCATGCGATGTGTTCATTAA
CAATATTCCGGCCTCTAAGCTGGGTTCGGGCGCAACGTCTACGTTGGTAGGCCTGACGGCGCTGGTAACTGGCTCTGGAA
CGGTATTTATCAATAATTGTCCCGCGACGCGTTGTAGTGATAAGACGGGGTGTGGCTCGGTTATTGTCACTGGGTCGCCC
AATGTATTTATAGGTAACTAA
ATGTTCAGTGCGGCAAAAATGGGCGATGTGACCAGCGATGGTGGTGCGATATGTACCGGTTCATGCGATGTGTTCATTAA
CAATATTCCGGCCTCTAAGCTGGGTTCGGGCGCAACGTCTACGTTGGTAGGCCTGACGGCGCTGGTAACTGGCTCTGGAA
CGGTATTTATCAATAATTGTCCCGCGACGCGTTGTAGTGATAAGACGGGGTGTGGCTCGGTTATTGTCACTGGGTCGCCC
AATGTATTTATAGGTAACTAA