Detailed information of component protein
Summary
| Component ID | T6CP002220 |
| Component protein type | TssG |
| T6SS ID (Type) | T6SS00223  (Type i3) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (342 a.a.); Nucleotide sequence (1026 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS08185 |
| Coordinate (Strand) | 1591502..1592527 (-) |
| NCBI ID | WP_011192712.1 |
| RefSeq | NC_009708 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_TssG | PF06996.13 | 1.9e-84 | 23..320 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-341 | MLPDESVHQEKHANLDAWYQESQPWNAGFISMMRANAARNPTLPAPGKAPLPEQEAFRIGQSAHMTFSPREISHAVMKDGKMDLQLFGLGIWGPNGAMPLQMTELAYTRAELHDHTMTDFVDLFHHRALSQLYRAWFVSQDTASLDRQSDEKFSFYVGSLAGLDPQELNDTELPVHARLASSAHLIREARNPEGLVGALQYYFDVPVRMVEYAEQWIFLEESDQTQLGDGAGAMLLGDGAILGNTVLDRQHKFQLILGPLSLQQYLRFSLWGQDLPVLREWVRNFVGFEYAWEVQLLLSADEVPMATLDGGHQLGYTSWLARSDTTLDVGGMSFEPEMHHD |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9590 | - | - |
Protein sequence: 342 a.a.
>T6CP002220 NC_009708:c1592527-1591502 [Yersinia pseudotuberculosis IP 31758] [TssG]
MLPDESVHQEKHANLDAWYQESQPWNAGFISMMRANAARNPTLPAPGKAPLPEQEAFRIGQSAHMTFSPREISHAVMKDG
KMDLQLFGLGIWGPNGAMPLQMTELAYTRAELHDHTMTDFVDLFHHRALSQLYRAWFVSQDTASLDRQSDEKFSFYVGSL
AGLDPQELNDTELPVHARLASSAHLIREARNPEGLVGALQYYFDVPVRMVEYAEQWIFLEESDQTQLGDGAGAMLLGDGA
ILGNTVLDRQHKFQLILGPLSLQQYLRFSLWGQDLPVLREWVRNFVGFEYAWEVQLLLSADEVPMATLDGGHQLGYTSWL
ARSDTTLDVGGMSFEPEMHHD*
MLPDESVHQEKHANLDAWYQESQPWNAGFISMMRANAARNPTLPAPGKAPLPEQEAFRIGQSAHMTFSPREISHAVMKDG
KMDLQLFGLGIWGPNGAMPLQMTELAYTRAELHDHTMTDFVDLFHHRALSQLYRAWFVSQDTASLDRQSDEKFSFYVGSL
AGLDPQELNDTELPVHARLASSAHLIREARNPEGLVGALQYYFDVPVRMVEYAEQWIFLEESDQTQLGDGAGAMLLGDGA
ILGNTVLDRQHKFQLILGPLSLQQYLRFSLWGQDLPVLREWVRNFVGFEYAWEVQLLLSADEVPMATLDGGHQLGYTSWL
ARSDTTLDVGGMSFEPEMHHD*
Nucleotide sequence: 1026 bp
>T6CP002220 NC_009708:c1592527-1591502 [Yersinia pseudotuberculosis IP 31758] [TssG]
ATGTTGCCCGATGAATCCGTTCACCAGGAAAAACATGCCAATCTGGACGCCTGGTATCAGGAGTCTCAGCCATGGAACGC
CGGTTTTATCAGCATGATGCGGGCGAATGCCGCCCGCAACCCTACCCTGCCAGCGCCAGGAAAAGCGCCCTTGCCTGAAC
AGGAAGCCTTCCGCATCGGGCAAAGTGCGCACATGACGTTCTCTCCGCGTGAGATATCTCATGCGGTTATGAAAGACGGG
AAAATGGATCTGCAACTTTTTGGCTTAGGGATTTGGGGGCCAAATGGTGCGATGCCGCTTCAGATGACCGAACTGGCCTA
TACCCGTGCCGAGTTGCATGATCATACGATGACGGACTTCGTCGACCTTTTTCATCACCGCGCATTATCACAGCTTTATC
GGGCGTGGTTTGTCTCTCAGGATACCGCCTCGCTAGACCGGCAGAGTGATGAAAAATTCTCCTTCTATGTCGGTAGTCTG
GCCGGGCTGGATCCTCAAGAACTTAATGACACCGAACTCCCGGTTCATGCCCGGTTAGCCTCCTCTGCCCATTTGATTCG
TGAAGCGCGCAACCCCGAAGGGCTCGTGGGCGCATTGCAGTATTACTTTGACGTCCCCGTGCGGATGGTGGAGTACGCCG
AGCAGTGGATCTTTCTGGAAGAAAGCGACCAGACACAATTGGGTGATGGTGCCGGCGCGATGCTCTTGGGCGACGGTGCT
ATTTTGGGCAATACCGTTTTGGATCGGCAGCATAAATTTCAACTGATCCTCGGCCCCCTCAGCCTGCAACAGTACCTGCG
CTTTAGCCTCTGGGGACAAGACTTACCAGTATTGCGAGAGTGGGTACGTAACTTTGTTGGGTTCGAATACGCCTGGGAAG
TCCAGTTGTTGTTAAGCGCCGATGAGGTTCCCATGGCAACACTCGATGGCGGACATCAATTGGGATACACCTCTTGGTTA
GCCCGCAGTGATACCACCCTTGATGTCGGTGGGATGAGTTTTGAGCCTGAAATGCATCACGATTAA
ATGTTGCCCGATGAATCCGTTCACCAGGAAAAACATGCCAATCTGGACGCCTGGTATCAGGAGTCTCAGCCATGGAACGC
CGGTTTTATCAGCATGATGCGGGCGAATGCCGCCCGCAACCCTACCCTGCCAGCGCCAGGAAAAGCGCCCTTGCCTGAAC
AGGAAGCCTTCCGCATCGGGCAAAGTGCGCACATGACGTTCTCTCCGCGTGAGATATCTCATGCGGTTATGAAAGACGGG
AAAATGGATCTGCAACTTTTTGGCTTAGGGATTTGGGGGCCAAATGGTGCGATGCCGCTTCAGATGACCGAACTGGCCTA
TACCCGTGCCGAGTTGCATGATCATACGATGACGGACTTCGTCGACCTTTTTCATCACCGCGCATTATCACAGCTTTATC
GGGCGTGGTTTGTCTCTCAGGATACCGCCTCGCTAGACCGGCAGAGTGATGAAAAATTCTCCTTCTATGTCGGTAGTCTG
GCCGGGCTGGATCCTCAAGAACTTAATGACACCGAACTCCCGGTTCATGCCCGGTTAGCCTCCTCTGCCCATTTGATTCG
TGAAGCGCGCAACCCCGAAGGGCTCGTGGGCGCATTGCAGTATTACTTTGACGTCCCCGTGCGGATGGTGGAGTACGCCG
AGCAGTGGATCTTTCTGGAAGAAAGCGACCAGACACAATTGGGTGATGGTGCCGGCGCGATGCTCTTGGGCGACGGTGCT
ATTTTGGGCAATACCGTTTTGGATCGGCAGCATAAATTTCAACTGATCCTCGGCCCCCTCAGCCTGCAACAGTACCTGCG
CTTTAGCCTCTGGGGACAAGACTTACCAGTATTGCGAGAGTGGGTACGTAACTTTGTTGGGTTCGAATACGCCTGGGAAG
TCCAGTTGTTGTTAAGCGCCGATGAGGTTCCCATGGCAACACTCGATGGCGGACATCAATTGGGATACACCTCTTGGTTA
GCCCGCAGTGATACCACCCTTGATGTCGGTGGGATGAGTTTTGAGCCTGAAATGCATCACGATTAA