Detailed information of component protein
Summary
| Component ID | T6CP002225 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00223  (Type i3) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (162 a.a.); Nucleotide sequence (486 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS08235 |
| Coordinate (Strand) | 1605404..1605889 (+) |
| NCBI ID | WP_002211573.1 |
| RefSeq | NC_009708 |
| Uniprot ID | A0A0U1QUS9_YERP3, A0A0T9QX71_9GAMM, A0A5P8YHR4_YERPE, A0A0T9MKL1_YERPU |
| KEGG ID | ype:YPO2937, ysi:BF17_22805, ypw:CH59_3137, ypq:DJ40_3879, ypr:BZ20_3545, ypu:BZ21_1961, ypj:CH55_4142, ypl:CH46_2168, ypc:BZ23_2245, ypv:BZ15_594, ypi:YpsIP31758_1369 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.6e-40 | 6..136 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-161 | MAQDMFIKIDGIEGESLDANHKNEIQVLAWNWDVAQHSNMHSGSGGGSGKASVSDFCFAHYIDKASPNLLSYCLLGKHIKNVQFVLRKAGGDPLEYLTIKFTDVIITRVDMAGSLEDETRPREEIRFSFTKMTQDYVMQNAEGHKSGVISANYDVKANMHS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9835 | - | - |
Protein sequence: 162 a.a.
>T6CP002225 NC_009708:1605404-1605889 [Yersinia pseudotuberculosis IP 31758] [TssD]
MAQDMFIKIDGIEGESLDANHKNEIQVLAWNWDVAQHSNMHSGSGGGSGKASVSDFCFAHYIDKASPNLLSYCLLGKHIK
NVQFVLRKAGGDPLEYLTIKFTDVIITRVDMAGSLEDETRPREEIRFSFTKMTQDYVMQNAEGHKSGVISANYDVKANMH
S*
MAQDMFIKIDGIEGESLDANHKNEIQVLAWNWDVAQHSNMHSGSGGGSGKASVSDFCFAHYIDKASPNLLSYCLLGKHIK
NVQFVLRKAGGDPLEYLTIKFTDVIITRVDMAGSLEDETRPREEIRFSFTKMTQDYVMQNAEGHKSGVISANYDVKANMH
S*
Nucleotide sequence: 486 bp
>T6CP002225 NC_009708:1605404-1605889 [Yersinia pseudotuberculosis IP 31758] [TssD]
ATGGCGCAAGATATGTTTATCAAAATTGATGGTATTGAAGGTGAGTCTTTGGATGCCAATCACAAAAACGAAATCCAGGT
ATTAGCTTGGAACTGGGATGTTGCTCAACACTCGAATATGCACAGCGGTTCAGGTGGCGGTTCAGGTAAAGCCTCTGTTT
CAGATTTTTGCTTCGCACATTATATCGATAAAGCTAGCCCGAACTTATTGAGCTATTGCTTGCTGGGTAAGCACATTAAA
AATGTTCAGTTCGTACTGCGTAAAGCCGGTGGCGATCCGCTGGAATATCTGACAATTAAATTTACCGATGTCATCATTAC
TCGTGTTGATATGGCGGGTTCTTTGGAAGATGAAACGCGTCCACGTGAAGAAATTCGTTTCTCATTCACTAAGATGACTC
AGGACTATGTTATGCAGAATGCTGAAGGCCATAAATCTGGCGTTATTTCTGCTAACTACGATGTTAAAGCTAACATGCAC
AGCTAA
ATGGCGCAAGATATGTTTATCAAAATTGATGGTATTGAAGGTGAGTCTTTGGATGCCAATCACAAAAACGAAATCCAGGT
ATTAGCTTGGAACTGGGATGTTGCTCAACACTCGAATATGCACAGCGGTTCAGGTGGCGGTTCAGGTAAAGCCTCTGTTT
CAGATTTTTGCTTCGCACATTATATCGATAAAGCTAGCCCGAACTTATTGAGCTATTGCTTGCTGGGTAAGCACATTAAA
AATGTTCAGTTCGTACTGCGTAAAGCCGGTGGCGATCCGCTGGAATATCTGACAATTAAATTTACCGATGTCATCATTAC
TCGTGTTGATATGGCGGGTTCTTTGGAAGATGAAACGCGTCCACGTGAAGAAATTCGTTTCTCATTCACTAAGATGACTC
AGGACTATGTTATGCAGAATGCTGAAGGCCATAAATCTGGCGTTATTTCTGCTAACTACGATGTTAAAGCTAACATGCAC
AGCTAA