Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00220  |
| T6SS type | Type i1 |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon (RefSeq) | chromosome (NC_009708) |
| Location | 361901..399776 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | FHA | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| YPSIP31758_RS02905 | 357165..357392 | + | 228 | WP_042593159.1 | hypothetical protein | ||
| YPSIP31758_RS02910 (malK) | 357396..358505 | + | 1110 | WP_002212091.1 | maltose/maltodextrin ABC transporter ATP-binding protein MalK | ||
| YPSIP31758_RS02915 | 358576..359847 | + | 1272 | WP_002212092.1 | maltoporin | ||
| YPSIP31758_RS02920 (malM) | 360088..360999 | + | 912 | WP_012104355.1 | maltose operon protein MalM | ||
| YPSIP31758_RS02925 | 361471..361749 | + | 279 | WP_011193204.1 | hypothetical protein | ||
| T6CP009352 | TssD | YPSIP31758_RS02930 | 361901..362419 | - | 519 | WP_002212097.1 | Hcp family type VI secretion system effector |
| T6CP002193 | TssB | YPSIP31758_RS02935 (tssB) | 362943..363440 | + | 498 | WP_002212098.1 | type VI secretion system contractile sheath small subunit |
| T6CP002194 | TssC | YPSIP31758_RS02940 (tssC) | 363508..364989 | + | 1482 | WP_002230616.1 | type VI secretion system contractile sheath large subunit |
| T6CP009353 | TssE | YPSIP31758_RS02945 (tssE) | 364996..365436 | + | 441 | WP_002212100.1 | type VI secretion system baseplate subunit TssE |
| T6CP002195 | TssF | YPSIP31758_RS02950 (tssF) | 365436..367256 | + | 1821 | WP_011193201.1 | type VI secretion system baseplate subunit TssF |
| T6CP002196 | TssG | YPSIP31758_RS02955 (tssG) | 367220..368308 | + | 1089 | WP_041175720.1 | type VI secretion system baseplate subunit TssG |
| T6CP011602 | FHA | YPSIP31758_RS02960 (tagH) | 368434..369750 | + | 1317 | WP_011193200.1 | type VI secretion system-associated FHA domain protein TagH |
| T6CP002197 | TssJ | YPSIP31758_RS02965 (tssJ) | 369750..370295 | + | 546 | WP_012104358.1 | type VI secretion system lipoprotein TssJ |
| T6CP002198 | TssK | YPSIP31758_RS02970 (tssK) | 370298..371644 | + | 1347 | WP_002212105.1 | type VI secretion system baseplate subunit TssK |
| T6CP002199 | TssL | YPSIP31758_RS02975 (icmH) | 371644..372411 | + | 768 | WP_002212106.1 | type IVB secretion system protein IcmH/DotU |
| T6CP002200 | TssH | YPSIP31758_RS02980 (tssH) | 372422..375025 | + | 2604 | WP_002212107.1 | type VI secretion system ATPase TssH |
| YPSIP31758_RS02985 | 375022..375819 | + | 798 | WP_002212108.1 | Fis family transcriptional regulator | ||
| YPSIP31758_RS02990 (tagO) | 375816..376502 | + | 687 | WP_002212109.1 | type VI secretion system-associated protein TagO | ||
| T6CP009354 | TssA | YPSIP31758_RS02995 (tssA) | 376508..377896 | + | 1389 | WP_002212110.1 | type VI secretion system protein TssA |
| T6CP002201 | TssM | YPSIP31758_RS03000 (tssM) | 377928..381461 | + | 3534 | WP_012104359.1 | type VI secretion system membrane subunit TssM |
| T6CP009355 | TssA | YPSIP31758_RS24540 | 381613..382926 | + | 1314 | WP_011193197.1 | type VI secretion system ImpA family N-terminal domain-containing protein |
| T6CP002202 | TssI | YPSIP31758_RS03010 | 382948..385170 | + | 2223 | WP_012104360.1 | type VI secretion system tip protein VgrG |
| YPSIP31758_RS03015 | 385176..385634 | + | 459 | WP_002213383.1 | DcrB-related protein | ||
| YPSIP31758_RS03020 | 385627..389499 | + | 3873 | pseudogene | PAAR/RHS domain-containing protein | ||
| YPSIP31758_RS03025 | 389845..390717 | + | 873 | WP_012104362.1 | hypothetical protein | ||
| YPSIP31758_RS22735 | 391169..391342 | + | 174 | pseudogene | DcrB-related protein | ||
| YPSIP31758_RS03035 | 391335..395204 | + | 3870 | pseudogene | PAAR/RHS domain-containing protein | ||
| YPSIP31758_RS03040 | 395591..396100 | + | 510 | WP_012104365.1 | hypothetical protein | ||
| YPSIP31758_RS22740 | 396154..396507 | - | 354 | WP_012104366.1 | type I toxin-antitoxin system SymE family toxin | ||
| YPSIP31758_RS03050 | 396504..396728 | - | 225 | WP_002213866.1 | type I toxin-antitoxin system SymE family toxin | ||
| YPSIP31758_RS03055 | 396810..397217 | - | 408 | WP_012104367.1 | helix-turn-helix domain-containing protein | ||
| YPSIP31758_RS22745 | 397311..397556 | + | 246 | pseudogene | hypothetical protein | ||
| T6CP002203 | TssI | YPSIP31758_RS03065 | 397578..399776 | + | 2199 | WP_012104368.1 | type VI secretion system tip protein VgrG |
| YPSIP31758_RS03070 | 399779..400201 | + | 423 | WP_002213861.1 | DcrB-related protein | ||
| YPSIP31758_RS03075 | 400246..404412 | + | 4167 | pseudogene | PAAR/RHS domain-containing protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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