Detailed information of component protein


Summary

Component ID T6CP002195
Component protein type TssF
T6SS ID (Type) T6SS00220 insolico (Type i1)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (607 a.a.); Nucleotide sequence (1821 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS02950
Coordinate (Strand) 365436..367256 (+)
NCBI ID WP_011193201.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.5e-150 3..602
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-606 MSFEKYFRDELDYLRQLGRDAAIERPHLAAFLSEQGSDPDVERLLEGFAFLTGNLREKIDDQFPELTHGLLNMLWPNYLRPIPSMTIIEYTPDESVVTEATLVKRGSQVMSIPIAQNGQRSAFINSNAHAGPQCTFTLCRDVWLFPMSIREISANSSNEQGILSVHFAAKAELNLQDLQLDKLRFYLGEDNYTSTQLYFWINHYFERAELVVNGITIPMPDFDFNPVGFERDDALLPYPKNAYMGYRILQEYFCFPEGFLFFDVNGVVDFPPHLNASEFSLNLYFSQALPPDVKVRSTTLRMNCTPAVNLFQHDSEAIDLDGTQTEYPLCVSYHNPDHYDIFSVDRVDSWLSEKGAPKGRGRGHGRVYTSFESFHHQIEHSQEKTALYYRLRVKNSLFRKGFEHYISFVRSDESKLVLAEENVSVSLTCTNRELPLSLRVGDINQLSTDSPSFATFRNITRPSVPLYPVLDGGLHWSLLSNMSLNYMSLLDKDALKQILHTYDFPSLHNRQSARASQKKLDAIQRIETQPIDRLFRGLPVRGLQTTLWLEQGAFSSEGELYLFSTVLARFFSLYASVNAFHLLKVINLDNQECYEWPVQTGQHALM


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9913 - -


  Protein sequence: 607 a.a.    

>T6CP002195 NC_009708:365436-367256 [Yersinia pseudotuberculosis IP 31758] [TssF]
MSFEKYFRDELDYLRQLGRDAAIERPHLAAFLSEQGSDPDVERLLEGFAFLTGNLREKIDDQFPELTHGLLNMLWPNYLR
PIPSMTIIEYTPDESVVTEATLVKRGSQVMSIPIAQNGQRSAFINSNAHAGPQCTFTLCRDVWLFPMSIREISANSSNEQ
GILSVHFAAKAELNLQDLQLDKLRFYLGEDNYTSTQLYFWINHYFERAELVVNGITIPMPDFDFNPVGFERDDALLPYPK
NAYMGYRILQEYFCFPEGFLFFDVNGVVDFPPHLNASEFSLNLYFSQALPPDVKVRSTTLRMNCTPAVNLFQHDSEAIDL
DGTQTEYPLCVSYHNPDHYDIFSVDRVDSWLSEKGAPKGRGRGHGRVYTSFESFHHQIEHSQEKTALYYRLRVKNSLFRK
GFEHYISFVRSDESKLVLAEENVSVSLTCTNRELPLSLRVGDINQLSTDSPSFATFRNITRPSVPLYPVLDGGLHWSLLS
NMSLNYMSLLDKDALKQILHTYDFPSLHNRQSARASQKKLDAIQRIETQPIDRLFRGLPVRGLQTTLWLEQGAFSSEGEL
YLFSTVLARFFSLYASVNAFHLLKVINLDNQECYEWPVQTGQHALM*

  Nucleotide sequence: 1821 bp    

>T6CP002195 NC_009708:365436-367256 [Yersinia pseudotuberculosis IP 31758] [TssF]
ATGTCGTTCGAAAAGTATTTCAGGGACGAGCTGGACTACCTCCGGCAATTAGGACGCGATGCCGCAATAGAACGGCCTCA
TCTCGCTGCATTTTTATCTGAGCAAGGTTCTGATCCGGATGTTGAACGTTTGCTGGAAGGCTTTGCTTTTCTAACGGGCA
ACCTGCGTGAAAAAATCGATGATCAATTCCCTGAATTGACTCATGGTTTACTGAATATGTTGTGGCCGAACTACTTACGG
CCAATACCGAGCATGACCATCATCGAGTACACACCGGATGAAAGTGTGGTCACCGAGGCGACGCTGGTGAAACGGGGTAG
CCAAGTGATGAGTATCCCCATCGCACAAAATGGTCAGCGCAGCGCGTTTATCAACAGTAATGCTCATGCCGGGCCACAAT
GTACTTTTACGTTGTGCCGTGATGTGTGGTTGTTCCCCATGTCCATCCGGGAGATCTCGGCGAACAGCAGTAACGAACAA
GGCATTTTGAGTGTTCACTTTGCCGCCAAAGCGGAATTGAACTTACAAGACCTGCAACTGGATAAATTGCGCTTTTATCT
GGGCGAAGACAACTACACCAGCACGCAACTCTATTTCTGGATTAACCACTATTTCGAACGCGCTGAACTGGTTGTCAACG
GGATAACCATCCCGATGCCTGATTTTGACTTTAACCCAGTGGGCTTTGAGCGCGATGATGCCCTCTTGCCGTACCCGAAA
AACGCCTATATGGGTTACCGGATCCTGCAAGAGTATTTTTGCTTCCCTGAAGGCTTTTTGTTCTTTGATGTCAATGGTGT
GGTCGATTTTCCGCCGCACTTGAATGCCAGTGAATTCTCTCTGAATTTGTATTTCTCTCAGGCATTGCCGCCGGACGTGA
AAGTCCGCTCCACCACACTGCGGATGAATTGCACACCTGCGGTGAACCTGTTCCAACATGACAGTGAAGCGATTGATCTT
GATGGAACCCAGACGGAATACCCGCTCTGTGTCAGCTACCATAATCCGGATCACTACGACATCTTTTCAGTTGATCGGGT
TGACAGTTGGCTCAGTGAAAAAGGTGCTCCTAAGGGGCGCGGCCGGGGGCATGGCAGGGTGTACACCTCGTTTGAGAGCT
TCCACCATCAGATCGAACACTCGCAAGAAAAGACCGCACTTTATTACCGCCTACGTGTGAAAAATTCATTATTCCGTAAG
GGATTCGAACACTACATTTCCTTTGTTCGCAGTGATGAATCGAAGCTGGTGCTTGCTGAAGAGAATGTCTCGGTCAGCCT
GACGTGCACCAACCGTGAGTTGCCGCTGTCGTTGCGCGTTGGTGATATCAATCAACTCAGCACAGACAGCCCTTCATTCG
CGACGTTCCGCAATATTACCCGTCCTTCCGTGCCGTTGTATCCGGTGCTGGATGGGGGCCTGCATTGGTCATTGCTCTCC
AATATGTCGTTGAACTACATGTCCTTACTGGATAAGGACGCGTTGAAGCAAATTCTGCATACCTATGATTTCCCAAGCCT
GCATAACCGGCAATCTGCCAGGGCATCGCAAAAGAAACTGGACGCTATCCAACGTATTGAAACACAACCGATTGACCGGT
TGTTTCGTGGCTTACCTGTCAGAGGGCTACAAACCACGCTATGGCTGGAGCAAGGGGCCTTTAGCTCTGAAGGCGAGCTT
TATCTCTTCAGCACGGTATTAGCTCGCTTCTTCTCACTGTATGCCAGCGTCAATGCGTTTCATCTTTTAAAAGTCATCAA
TCTTGATAATCAGGAATGTTACGAATGGCCGGTACAGACAGGTCAACATGCACTGATGTAA