Detailed information of component protein


Summary

Component ID T6CP002203
Component protein type TssI
T6SS ID (Type) T6SS00220 insolico (Type i1)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (733 a.a.); Nucleotide sequence (2199 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS03065
Coordinate (Strand) 397578..399776 (+)
NCBI ID WP_012104368.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.9e-82 134..431
Phage_base_V PF04717.14 5.8e-14 489..555
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-732 MFAHDKANNNKAADKTGAVTPTHIVSPEAAPTVSGAQMTGMAGGIGDAVGGTAGKRISQAAEVAKTALDAKAKVLDAGVKPMSVAASGAGVALPDSAAAALTRLVKQPSGLQFTLTAASLPPQTFAVVDFTLSEMLSSPFVLNVGLASADPAVDFAAVLDEDATLFIWREGVLQRSITGMVASFEQGDTGFHQTRYSMVIRPALWRTSLRRNARIFQQASVEEIITTLLKENGINDFAFGFRHPHPVREFCVQYQESDFDFIQRLTAEEGIFYYFEFSAGKNTVVYADDVGSLPKGASLPYNPNVAAQAQELSITTFTRSAQVRPAMVQLKDYTFKNPNWAAAFSEQSGELQNQRPDYEHFDFPGRFKDAQHGQDFTRYRLDALRNDANLGQGASNDFTLQPGQLFSLYNHPRGDLNHAWQLLGIQHSGKQMQALEQASGDQGTVLFNHFSFIPHTQTWRPTPLAKPAMDGPQIAMVVGPPGEEIYCDEYGRIRLQFLWDRYGQSNDNSSCWIRVTQPWAGQGWGMLAIPRIGQEVVVDFLHGDPDQPIVTGRTYHANNIPPGSLPASKTQMAFRSKTHKGEGYNEMRFEDAKGGEGLFMHAQKDMSTTVKDNQTTTVEKGNQTVTVEKGDRTVTVATGNETTDITQGSLTETIKVRRSTCANFIQVKAEGDAPGTQLYTATEQIKFVVGKSSITLNPDSIILQFSGSTSITLNAANIDAIAPLINLNKDKG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8828 - -


  Protein sequence: 733 a.a.    

>T6CP002203 NC_009708:397578-399776 [Yersinia pseudotuberculosis IP 31758] [TssI]
MFAHDKANNNKAADKTGAVTPTHIVSPEAAPTVSGAQMTGMAGGIGDAVGGTAGKRISQAAEVAKTALDAKAKVLDAGVK
PMSVAASGAGVALPDSAAAALTRLVKQPSGLQFTLTAASLPPQTFAVVDFTLSEMLSSPFVLNVGLASADPAVDFAAVLD
EDATLFIWREGVLQRSITGMVASFEQGDTGFHQTRYSMVIRPALWRTSLRRNARIFQQASVEEIITTLLKENGINDFAFG
FRHPHPVREFCVQYQESDFDFIQRLTAEEGIFYYFEFSAGKNTVVYADDVGSLPKGASLPYNPNVAAQAQELSITTFTRS
AQVRPAMVQLKDYTFKNPNWAAAFSEQSGELQNQRPDYEHFDFPGRFKDAQHGQDFTRYRLDALRNDANLGQGASNDFTL
QPGQLFSLYNHPRGDLNHAWQLLGIQHSGKQMQALEQASGDQGTVLFNHFSFIPHTQTWRPTPLAKPAMDGPQIAMVVGP
PGEEIYCDEYGRIRLQFLWDRYGQSNDNSSCWIRVTQPWAGQGWGMLAIPRIGQEVVVDFLHGDPDQPIVTGRTYHANNI
PPGSLPASKTQMAFRSKTHKGEGYNEMRFEDAKGGEGLFMHAQKDMSTTVKDNQTTTVEKGNQTVTVEKGDRTVTVATGN
ETTDITQGSLTETIKVRRSTCANFIQVKAEGDAPGTQLYTATEQIKFVVGKSSITLNPDSIILQFSGSTSITLNAANIDA
IAPLINLNKDKG*

  Nucleotide sequence: 2199 bp    

>T6CP002203 NC_009708:397578-399776 [Yersinia pseudotuberculosis IP 31758] [TssI]
ATGTTTGCTCATGATAAAGCTAATAATAATAAAGCCGCGGACAAGACCGGCGCAGTGACGCCGACCCATATCGTCTCGCC
GGAGGCCGCCCCAACCGTGAGTGGCGCTCAGATGACCGGGATGGCCGGGGGGATCGGGGATGCGGTGGGCGGCACTGCCG
GTAAGCGCATCAGTCAGGCTGCCGAGGTGGCTAAAACCGCCCTGGACGCCAAGGCAAAAGTACTGGACGCGGGTGTTAAA
CCGATGAGTGTGGCGGCAAGTGGCGCAGGAGTAGCATTACCGGACAGCGCCGCGGCGGCGCTTACCCGCCTGGTCAAACA
GCCCTCCGGCCTGCAATTTACCCTGACGGCGGCCAGTTTACCGCCCCAGACCTTTGCGGTGGTGGATTTCACCCTGAGCG
AGATGCTCTCCTCGCCGTTTGTGCTCAATGTCGGGCTGGCGAGTGCCGATCCGGCGGTGGATTTTGCGGCGGTATTGGAT
GAAGACGCCACGCTGTTTATCTGGCGCGAAGGGGTACTGCAACGCAGCATCACCGGCATGGTCGCCAGCTTTGAACAGGG
CGATACCGGTTTTCATCAGACCCGCTACAGCATGGTGATCCGCCCGGCGCTGTGGCGCACCAGCCTGCGGCGCAATGCCC
GCATCTTCCAGCAAGCCTCGGTGGAAGAGATCATCACCACCCTGCTGAAAGAGAACGGCATCAACGATTTTGCTTTTGGT
TTTCGCCACCCGCACCCGGTGCGCGAGTTCTGCGTGCAATATCAGGAGTCCGATTTTGATTTTATCCAGCGCCTGACGGC
AGAAGAGGGGATTTTCTACTACTTCGAGTTCAGCGCCGGGAAAAATACCGTGGTGTATGCCGATGATGTTGGCTCCCTGC
CGAAAGGCGCGTCACTGCCCTATAACCCGAATGTGGCGGCGCAGGCGCAGGAACTGAGTATCACCACCTTCACCCGCAGT
GCGCAGGTGCGCCCGGCGATGGTGCAACTGAAAGACTACACCTTTAAAAACCCGAACTGGGCCGCGGCCTTCAGCGAACA
GTCGGGAGAACTGCAAAACCAGCGACCGGACTACGAGCATTTTGATTTTCCGGGGCGCTTCAAAGATGCCCAGCACGGGC
AGGATTTTACCCGTTACCGGCTGGACGCGCTGCGCAATGACGCCAATCTGGGGCAGGGGGCGAGCAATGATTTTACCCTC
CAGCCGGGGCAGTTGTTCAGCCTGTACAACCACCCGCGTGGTGATCTGAACCACGCCTGGCAGTTGCTCGGCATTCAGCA
CAGCGGTAAACAGATGCAGGCGCTGGAGCAGGCATCTGGCGATCAGGGCACGGTGCTGTTCAACCACTTCAGTTTTATTC
CGCACACCCAGACCTGGCGGCCGACGCCGTTGGCTAAACCGGCGATGGACGGCCCGCAGATCGCCATGGTGGTGGGGCCA
CCGGGGGAAGAGATTTACTGCGACGAATACGGCCGTATCCGCCTGCAATTTTTATGGGATCGCTACGGGCAGAGCAATGA
CAACAGCTCCTGCTGGATCCGGGTGACCCAGCCGTGGGCGGGCCAGGGCTGGGGCATGCTGGCCATTCCGCGTATTGGTC
AGGAAGTGGTGGTGGATTTTCTGCACGGCGATCCGGATCAACCGATTGTCACGGGGCGGACCTATCACGCCAACAACATC
CCGCCGGGGTCGTTACCGGCCAGTAAAACCCAGATGGCGTTCCGCTCAAAAACCCACAAAGGGGAAGGCTACAACGAAAT
GCGCTTCGAGGATGCCAAAGGCGGCGAAGGGCTGTTTATGCATGCGCAGAAAGATATGAGTACCACGGTAAAAGATAACC
AGACGACGACGGTGGAGAAAGGTAATCAAACCGTCACCGTGGAAAAAGGTGACAGGACAGTCACGGTCGCGACCGGAAAT
GAAACCACAGATATTACCCAAGGGAGCCTGACCGAGACGATCAAAGTGCGTCGCAGTACCTGCGCGAATTTTATTCAGGT
GAAGGCTGAAGGTGATGCGCCTGGTACGCAACTTTATACCGCGACGGAACAGATAAAGTTCGTGGTGGGCAAGAGCAGCA
TTACCTTAAATCCGGACTCTATTATTCTGCAATTTTCTGGCTCTACCTCTATTACGCTGAATGCCGCCAATATTGACGCC
ATCGCGCCATTGATTAACTTAAATAAAGACAAGGGATAA