Detailed information of component protein


Summary

Component ID T6CP009354
Component protein type TssA
T6SS ID (Type) T6SS00220 insolico (Type i1)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (463 a.a.); Nucleotide sequence (1389 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS02995
Coordinate (Strand) 376508..377896 (+)
NCBI ID WP_002212110.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 5.3e-77 215..455
ImpA_N PF06812.14 8e-12 15..112
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-462 MDITSQHPWHVLLQAPLSPEQTAQALADDDPQWEYIDGQMVKLGSLAHATLNIDDIQQQAMALLSQKSKDFRLVVHLLRTLQHGGQPDELMLAMSLLTEYVQLFWTTAWPQNPLHKRRFAQQILKRFDSASSSFSQRADEAQRENVQGLLAHLAQVWHSREPGLAKEVDALRSRYARPPERVIEAVASDEPLSSNTLAAAMAATPVSPSLAIDNTSDRAWRQTLLKMADLLSEQQPDAAIGFRLRRHAVWGALTAPPMAQSDGRTPLAAVSADRTADYLARLANADLPLWHQVEQSLTLAPYWLDGHVLSAQIALQLGYDAVAQAIRDELSVFLARIPALKTLFFTDMTPFLSSESAAWLQQDANHQGRSRTIEQDEIWQCYQQQGLEAALQMINRQPQQSEPRDRFYHQLLSAQLFEKAGLTALAQQHYHSLLLVGQQLQLSEWEPALIALLTEKQRQLKP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8049 - -


  Protein sequence: 463 a.a.    

>T6CP009354 NC_009708:376508-377896 [Yersinia pseudotuberculosis IP 31758] [TssA]
MDITSQHPWHVLLQAPLSPEQTAQALADDDPQWEYIDGQMVKLGSLAHATLNIDDIQQQAMALLSQKSKDFRLVVHLLRT
LQHGGQPDELMLAMSLLTEYVQLFWTTAWPQNPLHKRRFAQQILKRFDSASSSFSQRADEAQRENVQGLLAHLAQVWHSR
EPGLAKEVDALRSRYARPPERVIEAVASDEPLSSNTLAAAMAATPVSPSLAIDNTSDRAWRQTLLKMADLLSEQQPDAAI
GFRLRRHAVWGALTAPPMAQSDGRTPLAAVSADRTADYLARLANADLPLWHQVEQSLTLAPYWLDGHVLSAQIALQLGYD
AVAQAIRDELSVFLARIPALKTLFFTDMTPFLSSESAAWLQQDANHQGRSRTIEQDEIWQCYQQQGLEAALQMINRQPQQ
SEPRDRFYHQLLSAQLFEKAGLTALAQQHYHSLLLVGQQLQLSEWEPALIALLTEKQRQLKP*

  Nucleotide sequence: 1389 bp    

>T6CP009354 NC_009708:376508-377896 [Yersinia pseudotuberculosis IP 31758] [TssA]
ATGGATATCACGTCACAACATCCCTGGCATGTCTTGTTACAAGCCCCTTTGTCACCTGAGCAGACCGCACAAGCCCTGGC
CGATGATGACCCCCAATGGGAATATATCGACGGCCAGATGGTGAAACTGGGGTCATTGGCCCACGCCACGCTGAATATTG
ATGATATTCAGCAACAAGCCATGGCGCTGTTATCACAGAAAAGTAAAGACTTCCGGCTCGTGGTGCATCTACTGCGCACC
CTACAACACGGGGGCCAGCCAGATGAATTAATGCTGGCGATGTCGTTGCTGACCGAATACGTCCAGCTATTTTGGACTAC
GGCCTGGCCGCAAAATCCTTTACACAAACGGCGCTTTGCTCAACAAATCCTAAAACGCTTTGACAGCGCCAGCAGCAGTT
TTAGCCAACGAGCGGACGAGGCTCAACGTGAGAATGTGCAAGGATTATTGGCACATTTAGCACAGGTTTGGCATAGCCGT
GAGCCGGGTCTGGCTAAAGAGGTGGATGCATTACGCAGCCGCTATGCGCGGCCACCGGAGCGGGTTATCGAGGCAGTGGC
TTCTGATGAACCGCTCTCATCCAACACCTTGGCGGCGGCAATGGCCGCCACCCCCGTTAGCCCAAGCCTCGCCATAGATA
ACACGAGCGACAGAGCCTGGCGGCAGACCTTGCTGAAAATGGCGGATTTACTCAGCGAACAGCAACCCGATGCCGCTATC
GGTTTCCGGTTACGCCGCCATGCCGTATGGGGCGCGTTAACCGCGCCACCTATGGCGCAGAGCGATGGCCGCACCCCGTT
GGCCGCAGTTTCTGCGGATCGAACCGCCGATTACTTAGCACGTCTGGCTAATGCCGATTTGCCTTTGTGGCACCAAGTGG
AGCAGAGCCTCACCCTCGCGCCTTATTGGCTGGATGGGCATGTGCTTTCGGCACAAATCGCCCTGCAACTGGGTTATGAC
GCGGTGGCACAGGCTATCCGTGATGAACTCAGCGTTTTTTTAGCCCGTATTCCCGCATTAAAAACCCTCTTTTTTACGGA
TATGACGCCATTCCTCTCCTCTGAATCTGCCGCCTGGTTACAGCAGGATGCGAATCATCAGGGAAGAAGTCGCACTATTG
AACAGGATGAAATTTGGCAATGCTATCAACAGCAAGGATTGGAAGCCGCACTACAGATGATAAACCGGCAACCACAGCAA
TCCGAACCTCGGGACCGTTTTTACCATCAATTGCTCAGTGCACAGTTGTTCGAAAAAGCAGGGTTAACCGCATTGGCGCA
GCAGCACTACCACAGCTTATTACTGGTGGGGCAGCAATTACAGCTAAGCGAATGGGAACCTGCGTTGATCGCTCTACTGA
CAGAAAAACAGCGACAACTCAAACCATGA