Detailed information of component protein
Summary
| Component ID | T6CP009352 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00220  (Type i1) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS02930 |
| Coordinate (Strand) | 361901..362419 (-) |
| NCBI ID | WP_002212097.1 |
| RefSeq | NC_009708 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 3.4e-33 | 7..155 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-172 | MPTPAYISITGKTQGNITAGAFTAESVGNIYVQGHEDEMLVQEFEHIVTVPTDPQSGQPSGQRAHKPLRFTVAYNKAVPLLYNALASGEMLPTVELKWYRTSIEGKQEHFFTTKLEDATIIDIDCKMPHCQDSTKAEFTQLVRVSLAYRKINWDHTTAGTSGADDWRAPIEA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9367 | - | - |
Protein sequence: 173 a.a.
>T6CP009352 NC_009708:c362419-361901 [Yersinia pseudotuberculosis IP 31758] [TssD]
MPTPAYISITGKTQGNITAGAFTAESVGNIYVQGHEDEMLVQEFEHIVTVPTDPQSGQPSGQRAHKPLRFTVAYNKAVPL
LYNALASGEMLPTVELKWYRTSIEGKQEHFFTTKLEDATIIDIDCKMPHCQDSTKAEFTQLVRVSLAYRKINWDHTTAGT
SGADDWRAPIEA*
MPTPAYISITGKTQGNITAGAFTAESVGNIYVQGHEDEMLVQEFEHIVTVPTDPQSGQPSGQRAHKPLRFTVAYNKAVPL
LYNALASGEMLPTVELKWYRTSIEGKQEHFFTTKLEDATIIDIDCKMPHCQDSTKAEFTQLVRVSLAYRKINWDHTTAGT
SGADDWRAPIEA*
Nucleotide sequence: 519 bp
>T6CP009352 NC_009708:c362419-361901 [Yersinia pseudotuberculosis IP 31758] [TssD]
ATGCCAACTCCAGCTTATATCTCTATCACAGGGAAAACGCAGGGCAATATTACCGCAGGTGCTTTCACAGCTGAATCCGT
CGGTAATATCTATGTTCAAGGTCATGAAGACGAAATGTTGGTACAGGAGTTTGAGCACATTGTGACGGTGCCTACCGACC
CTCAATCCGGCCAGCCTTCCGGCCAACGTGCGCACAAACCATTGCGTTTCACTGTTGCGTACAACAAAGCCGTTCCATTG
CTGTATAACGCATTAGCCTCTGGTGAAATGCTGCCAACAGTGGAATTGAAGTGGTACCGCACCTCGATTGAAGGCAAACA
AGAGCATTTCTTCACGACTAAACTGGAAGATGCCACCATTATCGACATCGATTGTAAAATGCCGCATTGTCAGGATTCCA
CCAAGGCTGAGTTTACTCAATTAGTCCGTGTATCACTGGCATACCGCAAGATTAACTGGGATCACACCACCGCGGGCACC
TCTGGTGCTGATGACTGGCGTGCGCCGATCGAAGCGTAA
ATGCCAACTCCAGCTTATATCTCTATCACAGGGAAAACGCAGGGCAATATTACCGCAGGTGCTTTCACAGCTGAATCCGT
CGGTAATATCTATGTTCAAGGTCATGAAGACGAAATGTTGGTACAGGAGTTTGAGCACATTGTGACGGTGCCTACCGACC
CTCAATCCGGCCAGCCTTCCGGCCAACGTGCGCACAAACCATTGCGTTTCACTGTTGCGTACAACAAAGCCGTTCCATTG
CTGTATAACGCATTAGCCTCTGGTGAAATGCTGCCAACAGTGGAATTGAAGTGGTACCGCACCTCGATTGAAGGCAAACA
AGAGCATTTCTTCACGACTAAACTGGAAGATGCCACCATTATCGACATCGATTGTAAAATGCCGCATTGTCAGGATTCCA
CCAAGGCTGAGTTTACTCAATTAGTCCGTGTATCACTGGCATACCGCAAGATTAACTGGGATCACACCACCGCGGGCACC
TCTGGTGCTGATGACTGGCGTGCGCCGATCGAAGCGTAA