Detailed information of component protein


Summary

Component ID T6CP002198
Component protein type TssK
T6SS ID (Type) T6SS00220 insolico (Type i1)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS02970
Coordinate (Strand) 370298..371644 (+)
NCBI ID WP_002212105.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.1e-152 19..445
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 MPTKNRVIWREGLFIKPQHFQQQQRHNDYQLQRRIIALQGYSYGFSSLILNQELLKLGRIGLTVASGNMADGTVFDIPYQDYSPKPLDVLNCNDAASRDIYLALPMLNDAINEVAGQQGQAPGTLRYREHSDDVRDLHTEGGDVSQLVLAQLAPRLMQGSEDLSAYSVLPLCRVKEKRPDGSLILDEEFIPTCTTLSVSTQLKGFMDEVEGTLVERAQLLAKRIGSPGQQGIADVAEFMMLQVFNRTQPLFTHLAHQAILHPEAFYHQLVQTCGELRTFTDESRLAGTFPVYNHDNLTDSFQPLFLAMRQALSTVLTPRAISIQLHMQAHGIRVATINDSDLLRSADFVLAVRAQIPQEQLRRQFVQQTKITSLEKIRDLVSVQLPGVPLVALSAAPRQLPYHSGYTYFMLDLQSPVWKEIQQSNAIAFHVSGDFPDLDMQFWAIRSS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9696 - -


  Protein sequence: 449 a.a.    

>T6CP002198 NC_009708:370298-371644 [Yersinia pseudotuberculosis IP 31758] [TssK]
MPTKNRVIWREGLFIKPQHFQQQQRHNDYQLQRRIIALQGYSYGFSSLILNQELLKLGRIGLTVASGNMADGTVFDIPYQ
DYSPKPLDVLNCNDAASRDIYLALPMLNDAINEVAGQQGQAPGTLRYREHSDDVRDLHTEGGDVSQLVLAQLAPRLMQGS
EDLSAYSVLPLCRVKEKRPDGSLILDEEFIPTCTTLSVSTQLKGFMDEVEGTLVERAQLLAKRIGSPGQQGIADVAEFMM
LQVFNRTQPLFTHLAHQAILHPEAFYHQLVQTCGELRTFTDESRLAGTFPVYNHDNLTDSFQPLFLAMRQALSTVLTPRA
ISIQLHMQAHGIRVATINDSDLLRSADFVLAVRAQIPQEQLRRQFVQQTKITSLEKIRDLVSVQLPGVPLVALSAAPRQL
PYHSGYTYFMLDLQSPVWKEIQQSNAIAFHVSGDFPDLDMQFWAIRSS*

  Nucleotide sequence: 1347 bp    

>T6CP002198 NC_009708:370298-371644 [Yersinia pseudotuberculosis IP 31758] [TssK]
ATGCCAACCAAAAATCGAGTGATTTGGCGCGAAGGGCTGTTCATCAAACCGCAACATTTTCAACAACAGCAACGGCATAA
CGACTACCAGTTACAACGCCGGATTATCGCTCTGCAAGGGTATAGCTATGGTTTCAGTTCACTGATCCTGAATCAGGAGT
TGTTGAAATTAGGGCGTATTGGCTTGACGGTCGCCAGTGGCAATATGGCTGATGGCACGGTATTTGATATCCCTTATCAA
GACTATTCACCAAAGCCATTGGATGTACTGAATTGTAATGATGCGGCCAGCCGTGACATTTATCTGGCATTACCGATGCT
AAACGATGCCATTAATGAGGTGGCAGGCCAGCAGGGGCAAGCGCCGGGAACCCTTCGCTATCGTGAACACAGTGATGATG
TCCGCGATTTACATACCGAAGGGGGCGATGTCAGCCAGTTGGTACTGGCACAGCTGGCGCCGCGTTTGATGCAAGGCTCG
GAAGACCTCAGTGCTTACTCGGTCCTGCCGCTGTGTCGGGTCAAAGAGAAACGGCCTGACGGTTCGCTAATCTTGGATGA
AGAGTTCATTCCCACCTGCACCACGCTCAGTGTCTCCACGCAGTTAAAAGGCTTTATGGATGAAGTCGAAGGGACATTGG
TTGAACGCGCCCAACTACTGGCGAAACGTATTGGTTCTCCCGGTCAGCAGGGGATCGCGGATGTGGCTGAATTTATGATG
TTGCAGGTCTTTAACCGGACACAGCCGCTCTTTACCCATTTGGCACATCAGGCGATTCTGCATCCAGAAGCGTTTTACCA
TCAGTTGGTACAAACCTGCGGTGAACTGCGCACGTTTACCGATGAATCACGCTTAGCGGGCACCTTCCCGGTTTATAACC
ACGATAACTTGACCGACAGTTTTCAGCCGTTGTTTTTGGCGATGCGTCAGGCATTAAGCACCGTGCTCACACCGCGTGCC
ATCTCTATCCAGTTGCATATGCAGGCACACGGTATTCGCGTTGCGACCATTAATGATAGTGATCTATTGCGCAGTGCTGA
TTTTGTGCTGGCGGTTCGGGCGCAAATACCTCAAGAACAATTGCGTCGGCAGTTTGTTCAGCAAACCAAAATCACCTCAC
TTGAGAAAATACGCGATTTGGTCAGTGTCCAACTGCCCGGCGTCCCGTTGGTGGCACTGTCCGCCGCACCGCGCCAGCTC
CCTTACCACTCGGGATACACCTACTTCATGCTGGATCTGCAAAGCCCTGTATGGAAAGAAATCCAGCAAAGCAATGCGAT
TGCCTTCCACGTCTCGGGTGATTTCCCTGATCTGGACATGCAATTCTGGGCAATCAGGAGCAGCTAA