Detailed information of component protein


Summary

Component ID T6CP011602
Component protein type FHA
T6SS ID (Type) T6SS00220 insolico (Type i1)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (439 a.a.); Nucleotide sequence (1317 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS02960
Coordinate (Strand) 368434..369750 (+)
NCBI ID WP_011193200.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-438 MDKKQPTLSLRVVNSDKLESGKQASSLFHAQGGSVGSDGSHHWSIQDQGGNISPSQFAIEWRDGSFCLRMLNGSLNINHSMLTPNSGFVRLQQGDEMTLGNLVIKSHISRSAADMIDPLMVSPESLVSSYSNPMDAMMEGEPLASPHHQQDSRLAATVSHNFSHDPLRVLETESLTTQGHDAVISDADHSLQQDRYRNPLFSSPLSDTPKDSAMDQAFIDLPQISTFLNGKQAGGKPEGLNNQMEQHHVAITPLMRGFDAQLPIRNSQEAHDFLEEAGKTLKATIEGLLALQRSQHGLRDKHLRPIEDNPLRLNMDYDTTLNLMFADQKSPVHLSAPAAVAESLDNLRLHHQANQQAITQALNTMLEAFSPERLLTRFTHYLRSNERQEQDSAWAWDMYKNYYNELASSRQQGFEKLFGEVYEQAYDRALRQGMKDSE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9527 - -


  Protein sequence: 439 a.a.    

>T6CP011602 NC_009708:368434-369750 [Yersinia pseudotuberculosis IP 31758] [FHA]
MDKKQPTLSLRVVNSDKLESGKQASSLFHAQGGSVGSDGSHHWSIQDQGGNISPSQFAIEWRDGSFCLRMLNGSLNINHS
MLTPNSGFVRLQQGDEMTLGNLVIKSHISRSAADMIDPLMVSPESLVSSYSNPMDAMMEGEPLASPHHQQDSRLAATVSH
NFSHDPLRVLETESLTTQGHDAVISDADHSLQQDRYRNPLFSSPLSDTPKDSAMDQAFIDLPQISTFLNGKQAGGKPEGL
NNQMEQHHVAITPLMRGFDAQLPIRNSQEAHDFLEEAGKTLKATIEGLLALQRSQHGLRDKHLRPIEDNPLRLNMDYDTT
LNLMFADQKSPVHLSAPAAVAESLDNLRLHHQANQQAITQALNTMLEAFSPERLLTRFTHYLRSNERQEQDSAWAWDMYK
NYYNELASSRQQGFEKLFGEVYEQAYDRALRQGMKDSE*

  Nucleotide sequence: 1317 bp    

>T6CP011602 NC_009708:368434-369750 [Yersinia pseudotuberculosis IP 31758] [FHA]
ATGGATAAAAAACAACCAACGCTGTCATTGCGGGTCGTCAACAGCGATAAATTAGAGAGTGGCAAACAAGCCAGCAGCCT
GTTTCATGCGCAAGGGGGCAGTGTCGGCAGTGACGGTAGCCATCATTGGTCGATTCAGGACCAAGGCGGCAATATCAGCC
CGTCACAGTTTGCTATCGAATGGCGTGATGGCTCTTTCTGCCTGCGGATGCTGAATGGCTCTCTGAACATTAATCATTCG
ATGCTAACACCCAATTCGGGTTTCGTTCGCCTACAGCAAGGGGATGAAATGACGTTGGGTAATCTGGTGATCAAAAGCCA
TATCAGCCGTTCTGCTGCCGATATGATCGATCCACTGATGGTGTCACCAGAGTCACTGGTATCGAGTTACAGCAACCCGA
TGGATGCCATGATGGAGGGGGAGCCGTTGGCCTCGCCTCATCATCAGCAAGACAGCCGGTTAGCCGCGACGGTTAGCCAT
AATTTCAGCCATGATCCATTACGGGTATTGGAAACGGAAAGCCTGACCACGCAAGGCCATGACGCCGTGATATCTGATGC
TGATCACTCTCTACAGCAGGACCGATACCGTAACCCACTTTTCTCTTCCCCGCTCTCTGATACCCCCAAGGACAGTGCTA
TGGATCAGGCGTTTATCGATCTCCCGCAGATCAGTACCTTTCTTAACGGTAAACAAGCGGGGGGCAAACCAGAAGGACTC
AATAACCAAATGGAACAACATCACGTTGCCATTACGCCGCTGATGCGTGGTTTTGACGCTCAACTCCCGATCCGCAACAG
CCAGGAAGCTCACGATTTCCTTGAAGAGGCGGGTAAAACACTCAAAGCGACAATCGAAGGTCTGCTCGCCTTACAACGCA
GTCAGCATGGCTTGCGTGATAAGCACTTACGGCCGATTGAAGATAATCCATTGCGTCTGAATATGGATTACGACACCACC
CTCAACTTGATGTTTGCCGATCAAAAAAGCCCGGTTCATCTTTCAGCGCCCGCCGCCGTGGCCGAAAGCCTGGATAACCT
GCGTTTGCATCATCAGGCCAATCAACAGGCGATTACGCAAGCCTTGAACACCATGTTGGAAGCCTTCTCCCCTGAGCGTT
TACTGACGCGTTTTACCCATTATTTGCGCAGTAATGAGCGGCAAGAGCAGGACTCCGCCTGGGCGTGGGATATGTACAAA
AACTACTATAACGAGCTGGCCTCCAGCCGCCAGCAAGGTTTTGAAAAACTGTTTGGCGAAGTGTATGAGCAAGCCTATGA
CCGGGCCTTACGTCAAGGCATGAAGGATAGCGAGTAA