Detailed information of component protein


Summary

Component ID T6CP009355
Component protein type TssA
T6SS ID (Type) T6SS00220 insolico (Type i1)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (438 a.a.); Nucleotide sequence (1314 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS24540
Coordinate (Strand) 381613..382926 (+)
NCBI ID WP_011193197.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VasL PF12486.10 3.4e-59 284..430
ImpA_N PF06812.14 3e-23 12..113
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-228 MSDTPQHIIIKTGTDPRNRPEFNAIREEINKINHPARPEVNWGLIESLALTLFRTHGVDLQTAVYYTLARTQKNGLAGFTEGCELLAGMVVGQWDHLWPEQPQARSEILEWFNTRVSNQLRQHDFTRDDLRLVYRAERALQLLYDKLQQVELKRVPRIENLLYLMQNTAKKLESASDAAKAQQTAAPLKMPPMVYLSVPEAEPVRTAAAAPEPAANIEVRSPPPETKR
Transmembrane helix 229-251 GAVLWGFGAGVLCSLLVATAVYV
Outside 252-437 TQFKPLQQQMTVLATQPESAALLWLNRPDVATYGEQLSTLENLSPLFVLNTADQSVAMARQRWPSDPSQVAESQRWARLVEARIGLAGTDSSYFQLQQRLHALSEKLLEQERSRGSLTISYLKTAVYQMQTELNREIPLEELLRQLAVSADEHQPASPVLIKQIDDRWNALLSRYHHLTQQTNSAR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9949 - -


  Protein sequence: 438 a.a.    

>T6CP009355 NC_009708:381613-382926 [Yersinia pseudotuberculosis IP 31758] [TssA]
MSDTPQHIIIKTGTDPRNRPEFNAIREEINKINHPARPEVNWGLIESLALTLFRTHGVDLQTAVYYTLARTQKNGLAGFT
EGCELLAGMVVGQWDHLWPEQPQARSEILEWFNTRVSNQLRQHDFTRDDLRLVYRAERALQLLYDKLQQVELKRVPRIEN
LLYLMQNTAKKLESASDAAKAQQTAAPLKMPPMVYLSVPEAEPVRTAAAAPEPAANIEVRSPPPETKRGAVLWGFGAGVL
CSLLVATAVYVTQFKPLQQQMTVLATQPESAALLWLNRPDVATYGEQLSTLENLSPLFVLNTADQSVAMARQRWPSDPSQ
VAESQRWARLVEARIGLAGTDSSYFQLQQRLHALSEKLLEQERSRGSLTISYLKTAVYQMQTELNREIPLEELLRQLAVS
ADEHQPASPVLIKQIDDRWNALLSRYHHLTQQTNSAR*

  Nucleotide sequence: 1314 bp    

>T6CP009355 NC_009708:381613-382926 [Yersinia pseudotuberculosis IP 31758] [TssA]
ATGAGTGACACCCCGCAACATATCATCATTAAAACCGGCACTGACCCACGGAACCGGCCGGAATTTAACGCCATTCGTGA
AGAGATCAACAAAATCAACCACCCGGCACGGCCAGAGGTCAACTGGGGTTTGATTGAATCACTGGCGCTGACCCTGTTCC
GTACCCACGGCGTGGATTTGCAGACGGCGGTGTATTACACGCTGGCCCGCACCCAAAAAAATGGCCTGGCCGGTTTCACC
GAGGGCTGCGAGTTGCTGGCCGGTATGGTGGTCGGCCAGTGGGATCACCTGTGGCCAGAACAGCCGCAGGCACGCAGTGA
AATACTGGAATGGTTCAATACCCGCGTCAGCAATCAACTGCGTCAGCATGATTTTACCCGTGACGATCTTCGGCTGGTGT
ACCGCGCTGAGCGGGCCTTGCAGTTGCTGTACGATAAATTGCAACAGGTTGAATTAAAACGGGTACCGCGCATTGAAAAC
CTGCTGTACCTGATGCAGAACACCGCCAAAAAACTCGAATCGGCCAGTGACGCGGCGAAGGCTCAGCAAACTGCGGCCCC
GCTGAAAATGCCGCCTATGGTCTATCTCTCGGTACCCGAGGCCGAGCCTGTCCGGACGGCAGCGGCAGCCCCTGAGCCTG
CGGCCAATATTGAGGTGCGTTCGCCCCCCCCGGAGACCAAACGGGGGGCGGTGCTGTGGGGCTTTGGTGCCGGTGTCCTG
TGCAGTTTACTGGTGGCGACTGCGGTTTACGTTACCCAGTTCAAACCGCTGCAACAGCAAATGACGGTGCTGGCCACCCA
ACCGGAAAGCGCGGCATTGCTGTGGCTCAACCGCCCGGATGTCGCCACCTATGGTGAGCAACTGAGCACCCTGGAAAACC
TCTCGCCCCTGTTTGTGCTCAATACCGCCGACCAGTCGGTGGCGATGGCTCGTCAACGCTGGCCGTCCGATCCCAGTCAG
GTGGCCGAAAGCCAGCGCTGGGCGCGGTTGGTGGAGGCGCGTATCGGCCTGGCCGGTACCGACAGCAGCTATTTCCAGCT
CCAGCAGCGCTTGCATGCGCTGTCTGAAAAATTACTCGAACAGGAACGTTCTCGGGGCAGTCTGACTATCTCCTATCTAA
AAACAGCAGTTTACCAGATGCAGACCGAGCTGAACCGGGAGATACCGCTGGAGGAGTTACTGCGCCAGCTGGCGGTGTCC
GCCGATGAACATCAACCGGCCTCGCCGGTCTTGATAAAACAAATTGATGACCGCTGGAACGCCTTACTCAGCCGTTATCA
CCACTTAACGCAGCAGACGAACTCTGCCCGTTAA