Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00160  |
| T6SS type | Type i4b |
| Strain | Azoarcus olearius |
| Replicon (RefSeq) | chromosome (NC_008702) |
| Location | 1406776..1436443 |
| Function | - |
| Comment | - |
| References | [1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] [2] Shidore T et al (2012) Transcriptomic analysis of responses to exudates reveal genes required for rhizosphere competence of the endophyte Azoarcus sp. strain BH72. Environ Microbiol. 14(10):2775-87. [PudMed:22616609] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagL | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| AZO_RS06545 | 1401860..1402312 | - | 453 | WP_011765024.1 | histidine phosphatase family protein | ||
| AZO_RS06550 | 1402375..1403868 | - | 1494 | WP_011765025.1 | CYTH and CHAD domain-containing protein | ||
| AZO_RS06555 (glnE) | 1403946..1406627 | - | 2682 | WP_011765026.1 | bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase | ||
| AZO_RS06560 | 1406776..1410699 | + | 3924 | WP_011765027.1 | TIGR02099 family protein | ||
| AZO_RS06565 | 1410696..1411553 | + | 858 | WP_011765028.1 | carbon-nitrogen hydrolase family protein | ||
| AZO_RS06570 (tldD) | 1411624..1413069 | + | 1446 | WP_011765029.1 | metalloprotease TldD | ||
| T6CP008421 | TssE | AZO_RS06575 (tssE) | 1413077..1413520 | - | 444 | WP_011765030.1 | type VI secretion system baseplate subunit TssE |
| T6CP001561 | TssL | AZO_RS06580 (icmH) | 1413533..1414231 | - | 699 | WP_011765031.1 | type IVB secretion system protein IcmH/DotU |
| T6CP001562 | TssK | AZO_RS06585 (tssK) | 1414245..1415591 | - | 1347 | WP_011765032.1 | type VI secretion system baseplate subunit TssK |
| T6CP001563 | TssJ | AZO_RS06590 (tssJ) | 1415603..1416217 | - | 615 | WP_011765033.1 | type VI secretion system lipoprotein TssJ |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||