Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00160  |
| T6SS type | Type i4b |
| Strain | Azoarcus olearius |
| Replicon (RefSeq) | chromosome (NC_008702) |
| Location | 1406776..1436443 |
| Function | - |
| Comment | - |
| References | [1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] [2] Shidore T et al (2012) Transcriptomic analysis of responses to exudates reveal genes required for rhizosphere competence of the endophyte Azoarcus sp. strain BH72. Environ Microbiol. 14(10):2775-87. [PudMed:22616609] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagL | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| AZO_RS06545 | 1401860..1402312 | - | 453 | WP_011765024.1 | histidine phosphatase family protein | ||
| AZO_RS06550 | 1402375..1403868 | - | 1494 | WP_011765025.1 | CYTH and CHAD domain-containing protein | ||
| AZO_RS06555 (glnE) | 1403946..1406627 | - | 2682 | WP_011765026.1 | bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase | ||
| AZO_RS06560 | 1406776..1410699 | + | 3924 | WP_011765027.1 | TIGR02099 family protein | ||
| AZO_RS06565 | 1410696..1411553 | + | 858 | WP_011765028.1 | carbon-nitrogen hydrolase family protein | ||
| AZO_RS06570 (tldD) | 1411624..1413069 | + | 1446 | WP_011765029.1 | metalloprotease TldD | ||
| T6CP008421 | TssE | AZO_RS06575 (tssE) | 1413077..1413520 | - | 444 | WP_011765030.1 | type VI secretion system baseplate subunit TssE |
| T6CP001561 | TssL | AZO_RS06580 (icmH) | 1413533..1414231 | - | 699 | WP_011765031.1 | type IVB secretion system protein IcmH/DotU |
| T6CP001562 | TssK | AZO_RS06585 (tssK) | 1414245..1415591 | - | 1347 | WP_011765032.1 | type VI secretion system baseplate subunit TssK |
| T6CP001563 | TssJ | AZO_RS06590 (tssJ) | 1415603..1416217 | - | 615 | WP_011765033.1 | type VI secretion system lipoprotein TssJ |
| AZO_RS20135 | 1416460..1417059 | + | 600 | WP_050976104.1 | M15 family metallopeptidase | ||
| T6CP001564 | TssM | AZO_RS06600 | 1417056..1420748 | + | 3693 | WP_011765035.1 | hypothetical protein |
| T6CP001565 | TssB | AZO_RS06605 (tssB) | 1420836..1421360 | + | 525 | WP_011765036.1 | type VI secretion system contractile sheath small subunit |
| T6CP001566 | TssC | AZO_RS06610 (tssC) | 1421344..1422837 | + | 1494 | WP_011765037.1 | type VI secretion system contractile sheath large subunit |
| T6CP001567 | TssD | AZO_RS06615 | 1422881..1423378 | + | 498 | WP_011765038.1 | type VI secretion system tube protein Hcp |
| T6CP011381 | TagL | AZO_RS06620 | 1423378..1423854 | + | 477 | WP_011765039.1 | OmpA family protein |
| T6CP001568 | TssI | AZO_RS06625 (tssI) | 1423911..1426628 | + | 2718 | WP_011765040.1 | type VI secretion system tip protein VgrG |
| T6CP001569 | TssF | AZO_RS06630 (tssF) | 1426635..1428473 | + | 1839 | WP_011765041.1 | type VI secretion system baseplate subunit TssF |
| T6CP001570 | TssG | AZO_RS06635 (tssG) | 1428437..1429453 | + | 1017 | WP_011765042.1 | type VI secretion system baseplate subunit TssG |
| T6CP001571 | TssA | AZO_RS06640 (tssA) | 1429450..1430565 | - | 1116 | WP_011765043.1 | type VI secretion system protein TssA |
| T6CP011382 | PAAR | AZO_RS06645 | 1430572..1430835 | - | 264 | WP_011765044.1 | PAAR domain-containing protein |
| AZO_RS06650 (trmA) | 1431039..1432133 | + | 1095 | WP_011765045.1 | tRNA (uridine(54)-C5)-methyltransferase TrmA | ||
| AZO_RS06655 | 1432168..1432506 | + | 339 | WP_011765046.1 | alkylphosphonate utilization protein | ||
| AZO_RS06660 | 1432522..1432893 | - | 372 | WP_011765047.1 | hypothetical protein | ||
| AZO_RS06665 (fetB) | 1432952..1433749 | - | 798 | WP_011765048.1 | iron export ABC transporter permease subunit FetB | ||
| AZO_RS06670 | 1433746..1434351 | - | 606 | WP_011765049.1 | energy-coupling factor ABC transporter ATP-binding protein | ||
| AZO_RS06675 | 1434635..1435387 | + | 753 | WP_011765050.1 | class I SAM-dependent methyltransferase | ||
| AZO_RS06680 | 1435529..1436443 | - | 915 | WP_011765051.1 | 39S ribosomal protein L45 | ||
| AZO_RS06685 | 1436614..1437468 | - | 855 | WP_011765052.1 | class I SAM-dependent methyltransferase | ||
| AZO_RS06690 | 1437635..1438639 | + | 1005 | WP_011765053.1 | AraC family transcriptional regulator | ||
| AZO_RS06695 | 1438850..1439570 | + | 721 | pseudogene | phospholipase D family protein | ||
| AZO_RS20720 | 1439758..1440165 | + | 408 | WP_148268723.1 | hypothetical protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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