Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS00160 insolico
T6SS type Type i4b
Strain Azoarcus olearius
Replicon (RefSeq) chromosome (NC_008702)
Location 1406776..1436443
Function -
Comment -
References
[1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603]
[2] Shidore T et al (2012) Transcriptomic analysis of responses to exudates reveal genes required for rhizosphere competence of the endophyte Azoarcus sp. strain BH72. Environ Microbiol. 14(10):2775-87. [PudMed:22616609]
insolico Bioinformatics investigation has been performed.

T6SS components and genome coordinates

ComponentPAARTagLTssATssBTssCTssDTssETssFTssGTssITssJTssKTssLTssM
Number11111111111111


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
AZO_RS06545 1401860..1402312 - 453 WP_011765024.1 histidine phosphatase family protein
AZO_RS06550 1402375..1403868 - 1494 WP_011765025.1 CYTH and CHAD domain-containing protein
AZO_RS06555 (glnE) 1403946..1406627 - 2682 WP_011765026.1 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase
AZO_RS06560 1406776..1410699 + 3924 WP_011765027.1 TIGR02099 family protein
AZO_RS06565 1410696..1411553 + 858 WP_011765028.1 carbon-nitrogen hydrolase family protein
AZO_RS06570 (tldD) 1411624..1413069 + 1446 WP_011765029.1 metalloprotease TldD
T6CP008421 TssE AZO_RS06575 (tssE) 1413077..1413520 - 444 WP_011765030.1 type VI secretion system baseplate subunit TssE
T6CP001561 TssL AZO_RS06580 (icmH) 1413533..1414231 - 699 WP_011765031.1 type IVB secretion system protein IcmH/DotU
T6CP001562 TssK AZO_RS06585 (tssK) 1414245..1415591 - 1347 WP_011765032.1 type VI secretion system baseplate subunit TssK
T6CP001563 TssJ AZO_RS06590 (tssJ) 1415603..1416217 - 615 WP_011765033.1 type VI secretion system lipoprotein TssJ
AZO_RS20135 1416460..1417059 + 600 WP_050976104.1 M15 family metallopeptidase
T6CP001564 TssM AZO_RS06600 1417056..1420748 + 3693 WP_011765035.1 hypothetical protein
T6CP001565 TssB AZO_RS06605 (tssB) 1420836..1421360 + 525 WP_011765036.1 type VI secretion system contractile sheath small subunit
T6CP001566 TssC AZO_RS06610 (tssC) 1421344..1422837 + 1494 WP_011765037.1 type VI secretion system contractile sheath large subunit
T6CP001567 TssD AZO_RS06615 1422881..1423378 + 498 WP_011765038.1 type VI secretion system tube protein Hcp
T6CP011381 TagL AZO_RS06620 1423378..1423854 + 477 WP_011765039.1 OmpA family protein
T6CP001568 TssI AZO_RS06625 (tssI) 1423911..1426628 + 2718 WP_011765040.1 type VI secretion system tip protein VgrG
T6CP001569 TssF AZO_RS06630 (tssF) 1426635..1428473 + 1839 WP_011765041.1 type VI secretion system baseplate subunit TssF
T6CP001570 TssG AZO_RS06635 (tssG) 1428437..1429453 + 1017 WP_011765042.1 type VI secretion system baseplate subunit TssG
T6CP001571 TssA AZO_RS06640 (tssA) 1429450..1430565 - 1116 WP_011765043.1 type VI secretion system protein TssA
T6CP011382 PAAR AZO_RS06645 1430572..1430835 - 264 WP_011765044.1 PAAR domain-containing protein
AZO_RS06650 (trmA) 1431039..1432133 + 1095 WP_011765045.1 tRNA (uridine(54)-C5)-methyltransferase TrmA
AZO_RS06655 1432168..1432506 + 339 WP_011765046.1 alkylphosphonate utilization protein
AZO_RS06660 1432522..1432893 - 372 WP_011765047.1 hypothetical protein
AZO_RS06665 (fetB) 1432952..1433749 - 798 WP_011765048.1 iron export ABC transporter permease subunit FetB
AZO_RS06670 1433746..1434351 - 606 WP_011765049.1 energy-coupling factor ABC transporter ATP-binding protein
AZO_RS06675 1434635..1435387 + 753 WP_011765050.1 class I SAM-dependent methyltransferase
AZO_RS06680 1435529..1436443 - 915 WP_011765051.1 39S ribosomal protein L45
AZO_RS06685 1436614..1437468 - 855 WP_011765052.1 class I SAM-dependent methyltransferase
AZO_RS06690 1437635..1438639 + 1005 WP_011765053.1 AraC family transcriptional regulator
AZO_RS06695 1438850..1439570 + 721 pseudogene phospholipase D family protein
AZO_RS20720 1439758..1440165 + 408 WP_148268723.1 hypothetical protein
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector