Detailed information of component protein


Summary

Component ID T6CP001568
Component protein type TssI
T6SS ID (Type) T6SS00160 insolico (Type i4b)
Strain Azoarcus olearius
Replicon chromosome
Sequence Protein sequence (906 a.a.); Nucleotide sequence (2718 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) AZO_RS06625
Coordinate (Strand) 1423911..1426628 (+)
NCBI ID WP_011765040.1
RefSeq NC_008702
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 9.6e-77 50..374
T6SS_Vgr PF13296.8 2.2e-36 546..653
DUF2345 PF10106.11 8.3e-35 683..829
Phage_base_V PF04717.14 4.2e-13 444..518
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-905 VTDSLRSAAADLLSVADAISFLPATRLVELRFAGGGPEGSPLIALSAYGEEGLNMCHRITVRCVAVDARIELITMLGLRAAIGIRTADGRERIRCGVVTAGVALGADGGFAAYEITVEPPLALLRHRWGSRVFQALTVPEIVRALVEEHRGRNPIFNAGLGLRFDLQRRYECRSYCVQYHESDLEFIERLLAEEGIGWRFDHEEDAAGAGPSTLLVLFDAADSLPPAEPPSVRFHRGNASETEDSLTSWSAQRSVGAGRTTLTSFDYKPAATTTARAEGVEEDGGDATSLEQALEDFRPQTLHYAPTVDGLAAYAALRQQARDAERNTFEADGDARGLTAGAWFQLEGHPRHEHEPGEERRFVVTRLTFVARSNLPVHSSLIDAAGEGRAWAGAGKTPYQIRLTAVRRGQASAGIFPPRRDLRPTARGPQSAIVVGPHDEEVHTDEYGRIRIQFHWQRQEDHPDGGAAYDERSSCWVRVALPSAGIAWGHQFIPRVGQEVLVDFLDGDIDRPVVTGVLGNGCHPPVRFSGVGALPANKALSGIKSREHGGAGFNELVFDDTAGQLRARLSTEHAATQLNLGCLVHPRENGQATVRGDGAELRTDGAAAVRGARGVLVSAHGRPRAAGSQLAREELMELLEQARELARTLSDYAGSHQGVPAESSGADALLQAVRQWDGDRAEGADRERGDGLVCAAAPEGIVIATGATLISCAAEDHEVCASHQLRLTAGEGLVANAGAGIGLFAQSGDLRSIAHQGLHLTQAQQGDVVTEAARNVRVSAAEGEVLISAPVIRLVAQDGSFLRLGGGIALGTEGAVQVKAARHSLGGPATDSIDLPVFDRAGADQRFALLYPGAEGAEPQPAGGRRYEITLKDGRVVAGTADAEGRTDMLTSEAMQVAHIRVFDR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9264 - -


  Protein sequence: 906 a.a.    

>T6CP001568 NC_008702:1423911-1426628 [Azoarcus olearius] [TssI]
VTDSLRSAAADLLSVADAISFLPATRLVELRFAGGGPEGSPLIALSAYGEEGLNMCHRITVRCVAVDARIELITMLGLRA
AIGIRTADGRERIRCGVVTAGVALGADGGFAAYEITVEPPLALLRHRWGSRVFQALTVPEIVRALVEEHRGRNPIFNAGL
GLRFDLQRRYECRSYCVQYHESDLEFIERLLAEEGIGWRFDHEEDAAGAGPSTLLVLFDAADSLPPAEPPSVRFHRGNAS
ETEDSLTSWSAQRSVGAGRTTLTSFDYKPAATTTARAEGVEEDGGDATSLEQALEDFRPQTLHYAPTVDGLAAYAALRQQ
ARDAERNTFEADGDARGLTAGAWFQLEGHPRHEHEPGEERRFVVTRLTFVARSNLPVHSSLIDAAGEGRAWAGAGKTPYQ
IRLTAVRRGQASAGIFPPRRDLRPTARGPQSAIVVGPHDEEVHTDEYGRIRIQFHWQRQEDHPDGGAAYDERSSCWVRVA
LPSAGIAWGHQFIPRVGQEVLVDFLDGDIDRPVVTGVLGNGCHPPVRFSGVGALPANKALSGIKSREHGGAGFNELVFDD
TAGQLRARLSTEHAATQLNLGCLVHPRENGQATVRGDGAELRTDGAAAVRGARGVLVSAHGRPRAAGSQLAREELMELLE
QARELARTLSDYAGSHQGVPAESSGADALLQAVRQWDGDRAEGADRERGDGLVCAAAPEGIVIATGATLISCAAEDHEVC
ASHQLRLTAGEGLVANAGAGIGLFAQSGDLRSIAHQGLHLTQAQQGDVVTEAARNVRVSAAEGEVLISAPVIRLVAQDGS
FLRLGGGIALGTEGAVQVKAARHSLGGPATDSIDLPVFDRAGADQRFALLYPGAEGAEPQPAGGRRYEITLKDGRVVAGT
ADAEGRTDMLTSEAMQVAHIRVFDR*

  Nucleotide sequence: 2718 bp    

>T6CP001568 NC_008702:1423911-1426628 [Azoarcus olearius] [TssI]
GTGACCGACTCGCTTCGATCCGCTGCCGCCGACCTGTTGTCGGTGGCAGACGCTATTTCATTCCTGCCGGCGACGCGTCT
GGTCGAACTGCGGTTCGCCGGTGGCGGCCCAGAAGGCAGCCCCTTGATCGCATTGAGTGCCTATGGCGAGGAGGGGCTCA
ACATGTGCCACCGGATCACGGTGCGCTGCGTCGCCGTGGACGCACGGATCGAGCTGATAACCATGCTCGGCCTGCGCGCG
GCGATCGGGATCCGCACCGCGGACGGACGGGAGCGGATTCGATGCGGGGTGGTGACCGCGGGGGTTGCACTCGGTGCCGA
CGGCGGCTTTGCAGCTTACGAGATCACGGTGGAGCCGCCACTCGCGCTGTTGCGCCACCGGTGGGGCAGCAGGGTGTTTC
AGGCGCTGACCGTGCCGGAGATCGTCCGGGCCCTGGTTGAGGAACACCGGGGTCGCAACCCCATCTTCAATGCCGGCCTG
GGGCTACGCTTCGATCTCCAGCGCCGCTACGAGTGCCGCTCCTACTGCGTGCAGTATCACGAGTCCGACCTCGAGTTCAT
CGAACGCCTGCTCGCGGAAGAGGGCATCGGCTGGCGCTTCGACCACGAAGAGGACGCAGCGGGGGCCGGGCCCTCGACCC
TGTTGGTGCTGTTTGACGCCGCAGACAGTCTCCCGCCCGCGGAGCCCCCATCGGTCCGCTTCCACCGCGGCAACGCCAGC
GAAACAGAGGACAGCCTCACCTCGTGGTCGGCCCAGCGCAGCGTCGGCGCCGGGCGCACGACGCTGACCAGTTTCGACTA
CAAGCCCGCCGCTACTACCACCGCGCGTGCCGAGGGCGTGGAAGAAGATGGGGGCGACGCCACTTCGCTCGAGCAGGCGC
TGGAGGATTTCCGGCCGCAGACCCTGCACTATGCGCCCACGGTCGATGGCCTCGCCGCATACGCGGCACTCCGCCAGCAG
GCGCGGGATGCGGAGCGCAATACCTTCGAGGCGGACGGGGATGCGCGTGGGCTGACGGCAGGGGCGTGGTTCCAGCTGGA
GGGGCACCCGCGCCACGAGCATGAACCGGGCGAAGAACGTCGCTTCGTGGTGACGCGCCTGACGTTCGTTGCGCGCAGCA
ATCTTCCCGTCCATTCGTCGCTGATCGACGCGGCGGGCGAGGGCCGCGCCTGGGCAGGGGCCGGAAAGACGCCTTATCAG
ATCCGGCTGACGGCGGTGCGTCGGGGGCAGGCGTCTGCCGGCATCTTTCCGCCGCGTCGCGACCTGCGCCCCACCGCCCG
CGGGCCTCAGAGCGCAATCGTGGTCGGGCCGCATGACGAAGAGGTTCACACCGACGAGTACGGCCGCATTCGCATCCAGT
TCCACTGGCAGCGGCAGGAAGATCACCCGGACGGCGGAGCCGCTTACGACGAGCGTTCCTCCTGCTGGGTGCGCGTCGCG
CTGCCCAGCGCGGGCATCGCCTGGGGGCATCAGTTCATTCCGCGCGTCGGCCAGGAGGTCCTGGTGGATTTCCTTGACGG
CGACATCGACCGGCCGGTGGTGACCGGCGTGCTGGGCAACGGGTGTCACCCTCCGGTCCGCTTTTCCGGGGTCGGCGCGC
TGCCCGCCAACAAGGCTCTGTCCGGGATCAAGTCGCGGGAGCACGGCGGCGCGGGCTTCAACGAGCTGGTGTTCGACGAC
ACGGCGGGGCAACTGCGGGCACGGCTGAGCACGGAACACGCAGCGACGCAGCTGAACCTCGGCTGCCTTGTCCATCCCCG
CGAAAACGGGCAGGCGACGGTCCGGGGTGACGGGGCAGAGCTGCGTACCGACGGCGCTGCCGCGGTTCGGGGTGCCCGCG
GCGTGCTGGTGAGTGCGCATGGACGGCCGCGCGCTGCCGGCAGCCAGCTGGCACGGGAAGAGTTGATGGAACTGCTGGAG
CAGGCGCGCGAACTCGCGCGCACGCTGTCCGATTACGCGGGCAGCCACCAGGGCGTTCCTGCCGAGAGCAGTGGCGCCGA
CGCGCTGCTGCAGGCAGTGCGTCAATGGGATGGGGATCGCGCCGAGGGTGCAGACCGGGAGCGCGGTGACGGACTCGTTT
GCGCGGCCGCGCCCGAGGGGATCGTGATTGCGACCGGTGCGACGCTGATCAGTTGCGCGGCCGAGGATCACGAGGTCTGT
GCCAGCCACCAGCTCCGGCTGACCGCAGGGGAAGGCTTGGTAGCGAATGCGGGCGCCGGCATCGGGCTCTTCGCCCAGTC
GGGCGACCTGCGCTCGATCGCACATCAGGGCCTGCATCTGACCCAGGCCCAGCAGGGCGACGTGGTGACCGAAGCCGCCC
GCAACGTCCGCGTTTCCGCGGCCGAAGGTGAAGTCCTGATCAGCGCGCCGGTAATCCGGCTCGTGGCCCAGGACGGCTCC
TTCCTCCGGTTGGGAGGCGGCATCGCGCTGGGAACCGAAGGTGCGGTGCAGGTCAAGGCCGCGCGCCACAGCTTGGGCGG
TCCCGCCACCGACAGCATTGATCTGCCGGTCTTCGACCGTGCCGGCGCCGACCAGCGCTTCGCGTTGCTCTACCCCGGCG
CCGAGGGTGCGGAGCCGCAGCCTGCCGGCGGACGGCGATACGAGATCACGCTGAAGGATGGGCGCGTCGTGGCCGGCACT
GCCGACGCCGAGGGCAGGACCGACATGCTGACGAGCGAGGCCATGCAGGTGGCCCACATCCGTGTCTTCGACCGCTGA