Detailed information of component protein


Summary

Component ID T6CP001562
Component protein type TssK
T6SS ID (Type) T6SS00160 insolico (Type i4b)
Strain Azoarcus olearius
Replicon chromosome
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) AZO_RS06585
Coordinate (Strand) 1414245..1415591 (-)
NCBI ID WP_011765032.1
RefSeq NC_008702
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.8e-129 19..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 MLKTRRVLWGEGMFLRPQHFQQQALQHEAALAGSLQGLYRHAWGARAVVVDETGLAAGVLRFDNLSIWFRDGTRYCAPEHDPLPPSRDLAGISADGNTVLVYACLPELHPHGGNVGDHERNPAQRVRFLKRHAASCDLYSGALEAELTLLDLNVQLRLEDENRDGFESLPVARLRRDGQGQWSVDASYLPPSLDLALDGAAARLLRRLLDILQVKSGLLAARQREHATHLLEYGSSDIAAFWLLHTVNRNYARLQHLERARPLHPEALYLALAELYGELVTFSRSHTLADLPPYRHENLAGSLTPLDDRIRDLLDTVVSNRHQVITLRNPKPSFHIGHLDNERLLEADFYLSVQSSMPAAAVIDAVPSKLKIGAPDDVEKILNSAVRGVAVVHATQTPSSVPVRIGNHYFALEPNSEVYQRMVQARSVCVYVPQTLADLKLELIAVFR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9705 - -


  Protein sequence: 449 a.a.    

>T6CP001562 NC_008702:c1415591-1414245 [Azoarcus olearius] [TssK]
MLKTRRVLWGEGMFLRPQHFQQQALQHEAALAGSLQGLYRHAWGARAVVVDETGLAAGVLRFDNLSIWFRDGTRYCAPEH
DPLPPSRDLAGISADGNTVLVYACLPELHPHGGNVGDHERNPAQRVRFLKRHAASCDLYSGALEAELTLLDLNVQLRLED
ENRDGFESLPVARLRRDGQGQWSVDASYLPPSLDLALDGAAARLLRRLLDILQVKSGLLAARQREHATHLLEYGSSDIAA
FWLLHTVNRNYARLQHLERARPLHPEALYLALAELYGELVTFSRSHTLADLPPYRHENLAGSLTPLDDRIRDLLDTVVSN
RHQVITLRNPKPSFHIGHLDNERLLEADFYLSVQSSMPAAAVIDAVPSKLKIGAPDDVEKILNSAVRGVAVVHATQTPSS
VPVRIGNHYFALEPNSEVYQRMVQARSVCVYVPQTLADLKLELIAVFR*

  Nucleotide sequence: 1347 bp    

>T6CP001562 NC_008702:c1415591-1414245 [Azoarcus olearius] [TssK]
ATGCTGAAGACTCGACGTGTGCTGTGGGGGGAAGGCATGTTCCTGCGCCCGCAGCACTTCCAGCAGCAGGCGCTGCAGCA
TGAAGCGGCGCTGGCAGGAAGCCTCCAGGGCCTGTACCGCCATGCGTGGGGCGCCCGGGCAGTCGTGGTCGACGAGACCG
GGCTGGCGGCAGGTGTGCTGCGATTCGACAATCTCAGCATCTGGTTCCGCGACGGCACCCGCTACTGCGCACCGGAACAT
GATCCGCTCCCACCCTCGCGCGACCTCGCAGGCATTTCGGCCGATGGAAATACCGTCCTGGTGTACGCCTGCCTTCCGGA
GTTGCACCCCCACGGCGGCAACGTGGGCGACCACGAGCGCAACCCTGCTCAGCGCGTGCGCTTTCTCAAACGCCACGCCG
CCAGTTGTGATTTGTATTCCGGCGCACTCGAAGCCGAACTCACGCTGCTCGACCTCAACGTCCAGCTTCGTCTGGAAGAC
GAAAACCGCGATGGCTTCGAGTCGCTGCCGGTTGCACGCCTGCGGCGAGATGGACAGGGGCAATGGTCGGTCGATGCGTC
CTATCTTCCCCCCAGCCTGGATCTGGCCCTGGATGGCGCCGCGGCCCGCCTGCTGCGCCGCCTGCTCGACATCCTCCAGG
TCAAGAGCGGCCTGCTGGCAGCACGTCAGCGGGAACACGCCACCCATCTGCTGGAATACGGCAGCAGCGACATTGCCGCG
TTCTGGCTCCTGCACACGGTGAACCGGAACTACGCCCGTCTGCAGCATCTCGAGCGGGCCCGGCCGCTGCATCCCGAAGC
GCTGTACCTTGCGCTGGCCGAGCTGTACGGCGAACTGGTCACCTTCTCCCGCAGCCACACCCTGGCCGACCTCCCTCCCT
ACCGCCACGAGAACCTCGCCGGCTCGTTGACGCCCCTCGATGATCGGATCCGCGACCTGCTCGATACCGTGGTTTCGAAT
CGGCACCAAGTCATCACGCTGCGCAATCCCAAGCCTTCGTTCCACATCGGCCATCTGGACAACGAACGCTTGCTGGAGGC
GGACTTCTATCTATCCGTGCAATCCTCCATGCCGGCTGCTGCGGTCATTGACGCCGTGCCGTCAAAGCTGAAGATCGGCG
CCCCGGACGACGTCGAGAAGATACTGAACTCGGCGGTACGCGGCGTTGCAGTCGTCCACGCCACGCAGACCCCGTCATCG
GTCCCGGTTCGTATCGGCAACCACTATTTCGCACTTGAACCGAACAGCGAGGTGTACCAGCGCATGGTCCAGGCGCGCTC
CGTCTGCGTCTATGTGCCGCAAACCCTCGCTGACCTCAAGCTGGAACTGATTGCGGTCTTCCGCTGA