Detailed information of component protein


Summary

Component ID T6CP001566
Component protein type TssC
T6SS ID (Type) T6SS00160 insolico (Type i4b)
Strain Azoarcus olearius
Replicon chromosome
Sequence Protein sequence (498 a.a.); Nucleotide sequence (1494 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) AZO_RS06610
Coordinate (Strand) 1421344..1422837 (+)
NCBI ID WP_011765037.1
RefSeq NC_008702
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 6.4e-135 71..372
VipB_2 PF18945.2 1.7e-46 382..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-497 MTARDEHLVRTSASPQVEAEGAGLLDSLIARSRVAVDEAEHDRTRDLIGELVQEVMSGALPLTCDLAASIDARIAELDELISAQLNEIMHDPEFQRLEGSWRGLKYLVDAAETGPMLKLRMLNVSKKELIKDFRQAAEFDQGALFKKVYEEEYGTFGGAPFAALVGDYEFSRHPEDLYLLEELAHVAAAAHAPFIGAVAPAMFGLDNFAELGRPRDLSRIFETVEYAKWKSFRASDDSRYVGLVLPHVLGRLPYGRDTHPVDAFNFEEDVDGSDHAKYLWTSAVYSYASRLTAAFAQFGWLAAIRGVEGGGLVEDLPLHTFRTDDGEIGAKCPTELAITDRNEKLLADLGFIALTHCKNSDYAAFFSGQSVQRPRTYNTDAANANARLSAQLPYIFASSRIAHYLKAMMRDKVGSFASRQNVQDFLNAWLAQYVLLDDAASQEAKSKYPLREARVEVVEVPGRPGAYRAAAFLRPHFQLDELTISLRLVAELPQPAR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9817 - -


  Protein sequence: 498 a.a.    

>T6CP001566 NC_008702:1421344-1422837 [Azoarcus olearius] [TssC]
MTARDEHLVRTSASPQVEAEGAGLLDSLIARSRVAVDEAEHDRTRDLIGELVQEVMSGALPLTCDLAASIDARIAELDEL
ISAQLNEIMHDPEFQRLEGSWRGLKYLVDAAETGPMLKLRMLNVSKKELIKDFRQAAEFDQGALFKKVYEEEYGTFGGAP
FAALVGDYEFSRHPEDLYLLEELAHVAAAAHAPFIGAVAPAMFGLDNFAELGRPRDLSRIFETVEYAKWKSFRASDDSRY
VGLVLPHVLGRLPYGRDTHPVDAFNFEEDVDGSDHAKYLWTSAVYSYASRLTAAFAQFGWLAAIRGVEGGGLVEDLPLHT
FRTDDGEIGAKCPTELAITDRNEKLLADLGFIALTHCKNSDYAAFFSGQSVQRPRTYNTDAANANARLSAQLPYIFASSR
IAHYLKAMMRDKVGSFASRQNVQDFLNAWLAQYVLLDDAASQEAKSKYPLREARVEVVEVPGRPGAYRAAAFLRPHFQLD
ELTISLRLVAELPQPAR*

  Nucleotide sequence: 1494 bp    

>T6CP001566 NC_008702:1421344-1422837 [Azoarcus olearius] [TssC]
ATGACGGCGCGCGATGAACACCTGGTGCGCACGAGCGCTTCTCCCCAGGTCGAGGCAGAGGGTGCCGGACTGCTGGATTC
GCTGATCGCGCGCAGTCGGGTCGCGGTGGATGAGGCAGAGCACGACCGCACCCGCGACCTCATCGGCGAACTCGTTCAGG
AGGTCATGAGCGGGGCCCTGCCGCTGACCTGCGACCTTGCGGCATCGATCGACGCCCGTATCGCCGAGCTGGATGAACTC
ATCTCGGCACAGCTCAACGAGATCATGCACGACCCCGAGTTCCAGCGGCTTGAAGGAAGCTGGCGCGGGCTCAAGTACCT
GGTCGACGCCGCAGAGACCGGGCCGATGCTCAAGCTGCGCATGCTCAATGTGTCCAAGAAGGAGTTGATCAAGGACTTCC
GCCAGGCGGCGGAGTTCGATCAGGGGGCCTTGTTCAAGAAGGTGTACGAGGAGGAGTACGGCACCTTCGGCGGCGCCCCC
TTCGCGGCGCTGGTCGGGGACTACGAGTTTTCCCGCCATCCCGAGGATCTCTATCTGCTCGAGGAACTGGCACACGTCGC
CGCCGCGGCGCACGCCCCGTTCATCGGGGCCGTGGCGCCGGCGATGTTCGGGCTGGACAACTTCGCCGAACTGGGCCGGC
CGCGCGATCTCTCCCGGATCTTCGAAACCGTCGAGTACGCAAAGTGGAAGTCCTTCCGGGCGAGCGACGATTCGCGCTAT
GTGGGGCTGGTACTGCCGCATGTGCTGGGGCGGCTGCCCTATGGGCGGGATACCCATCCGGTGGATGCGTTCAACTTCGA
GGAGGACGTGGATGGCAGCGACCACGCCAAGTATCTGTGGACCAGCGCAGTCTATTCCTATGCGAGCCGCCTGACCGCTG
CCTTTGCCCAGTTCGGCTGGCTTGCCGCTATACGGGGGGTTGAAGGGGGCGGGCTGGTTGAGGATCTGCCGCTCCATACC
TTCCGTACCGACGACGGCGAAATCGGCGCCAAGTGCCCGACCGAACTTGCCATAACGGACCGCAACGAAAAGCTGCTGGC
CGACCTGGGGTTCATCGCACTGACGCACTGCAAGAACAGCGACTACGCCGCGTTTTTCAGCGGCCAGTCGGTACAGCGTC
CGCGTACCTACAACACCGATGCCGCCAATGCCAATGCGCGCTTGTCGGCCCAACTGCCCTACATCTTTGCCTCGTCGCGG
ATCGCGCATTACCTGAAGGCGATGATGCGCGACAAGGTGGGCAGTTTCGCCTCGCGCCAGAATGTCCAGGACTTCCTCAA
CGCGTGGCTCGCGCAGTACGTGTTGCTCGACGACGCAGCCTCCCAGGAAGCGAAGTCCAAGTACCCGCTGCGGGAGGCGC
GGGTGGAGGTGGTCGAGGTGCCGGGGCGCCCCGGCGCCTACCGCGCAGCAGCCTTCCTGCGCCCCCATTTCCAGCTCGAC
GAACTGACGATTTCCCTGCGCCTGGTTGCGGAGCTGCCCCAACCCGCGCGCTGA