Detailed information of component protein


Summary

Component ID T6CP011382
Component protein type PAAR
T6SS ID (Type) T6SS00160 insolico (Type i4b)
Strain Azoarcus olearius
Replicon chromosome
Sequence Protein sequence (88 a.a.); Nucleotide sequence (264 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) AZO_RS06645
Coordinate (Strand) 1430572..1430835 (-)
NCBI ID WP_011765044.1
RefSeq NC_008702
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 2.8e-26 8..78
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-87 MKRLIRLGDPTTHGGVVISASSSYEVLGRPVARVGDRVTCPMQGHGLAVIIEGDPDWLIDGRPVALEGHLTSCGATLIATVASVGRE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8944 - -


  Protein sequence: 88 a.a.    

>T6CP011382 NC_008702:c1430835-1430572 [Azoarcus olearius] [PAAR]
MKRLIRLGDPTTHGGVVISASSSYEVLGRPVARVGDRVTCPMQGHGLAVIIEGDPDWLIDGRPVALEGHLTSCGATLIAT
VASVGRE*

  Nucleotide sequence: 264 bp    

>T6CP011382 NC_008702:c1430835-1430572 [Azoarcus olearius] [PAAR]
ATGAAACGCTTGATCCGGCTCGGGGACCCTACGACACACGGCGGCGTGGTGATCAGCGCCTCTTCCAGCTACGAAGTGCT
CGGCCGCCCGGTCGCCCGCGTCGGCGATCGGGTCACCTGCCCGATGCAGGGCCACGGCCTGGCTGTCATCATCGAAGGCG
ACCCCGACTGGCTGATCGACGGCCGGCCCGTCGCCCTCGAAGGCCACCTCACCAGTTGCGGCGCAACGCTGATCGCCACG
GTGGCCAGCGTGGGCAGGGAGTAA