Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS00028 insolico
T6SS type Type i3
Strain Xanthomonas axonopodis pv. citri str. 306
Replicon (RefSeq) chromosome (NC_003919)
Location 4859777..4880603
Function -
Comment -
References
[1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603]
insolico Bioinformatics investigation has been performed.

T6SS components and genome coordinates

ComponentTagJTssBTssCTssDTssETssFTssGTssH
Number11111111


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
XAC_RS20820 4855304..4856611 + 1308 WP_015471425.1 histidine-type phosphatase
XAC_RS20825 4856682..4857986 + 1305 WP_015463735.1 hypothetical protein
XAC_RS20830 4858635..4859369 - 735 WP_015471424.1 hypothetical protein
XAC_RS20835 4859777..4861804 - 2028 WP_003487331.1 hypothetical protein
XAC_RS20840 4862118..4862381 + 264 WP_040107697.1 hypothetical protein
XAC_RS20845 4862893..4864107 + 1215 WP_011050083.1 IS4-like element ISXac1 family transposase
XAC_RS25685 4864528..4865544 - 1017 WP_011052759.1 hypothetical protein
T6CP000219 TssH XAC_RS20850 (tssH) 4865531..4868311 - 2781 WP_011052760.1 type VI secretion system ATPase TssH
T6CP000220 TssG XAC_RS20855 (tssG) 4868367..4869407 - 1041 WP_011052761.1 type VI secretion system baseplate subunit TssG
T6CP000221 TssF XAC_RS20860 (tssF) 4869371..4871254 - 1884 WP_011052762.1 type VI secretion system baseplate subunit TssF
T6CP000222 TssE XAC_RS20865 (tssE) 4871259..4871762 - 504 WP_003489896.1 type VI secretion system baseplate subunit TssE
T6CP012701 TagJ XAC_RS20870 4871768..4872562 - 795 WP_015463737.1 hypothetical protein
T6CP000223 TssD XAC_RS20875 4872761..4873264 - 504 WP_003489893.1 type VI secretion system tube protein Hcp
T6CP000224 TssC XAC_RS20880 (tssC) 4873345..4874838 - 1494 WP_011052764.1 type VI secretion system contractile sheath large subunit
T6CP000225 TssB XAC_RS20885 (tssB) 4874842..4875351 - 510 WP_011052765.1 type VI secretion system contractile sheath small subunit
XAC_RS20890 4875665..4876336 + 672 WP_011052766.1 helix-turn-helix domain-containing protein
XAC_RS20895 4876433..4876879 - 447 WP_011052767.1 universal stress protein
XAC_RS20900 4877137..4877715 - 579 WP_011052768.1 sugar O-acetyltransferase
XAC_RS25805 4878033..4878232 + 200 pseudogene hypothetical protein
XAC_RS20905 (uvrD) 4878411..4880597 - 2187 WP_015463741.1 DNA helicase II
XAC_RS20910 4880837..4882228 - 1392 WP_011052770.1 FAD/NAD(P)-binding protein
XAC_RS20920 (cls) 4882485..4883903 - 1419 WP_040107698.1 cardiolipin synthase
XAC_RS20925 4883920..4885227 - 1308 WP_003489877.1 LysR family transcriptional regulator
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)
REG0089 experimental xac4129 (ecfK/RpoE,ECF σ factor) protein Unknown Xanthomonas citri pv. citri str. 306 chromosome (NC_003919) 4850278..4850805 (+) 489582896 Unknown (↓)
REG0090 experimental xac4127 (PknS) protein Unknown Xanthomonas citri pv. citri str. 306 chromosome (NC_003919) 4846892..4849411 (-) 505284326 Unknown (↓)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector