Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00028  |
| T6SS type | Type i3 |
| Strain | Xanthomonas axonopodis pv. citri str. 306 |
| Replicon (RefSeq) | chromosome (NC_003919) |
| Location | 4859777..4880603 |
| Function | - |
| Comment | - |
| References | [1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TagJ | TssB | TssC | TssD | TssE | TssF | TssG | TssH |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| XAC_RS20820 | 4855304..4856611 | + | 1308 | WP_015471425.1 | histidine-type phosphatase | ||
| XAC_RS20825 | 4856682..4857986 | + | 1305 | WP_015463735.1 | hypothetical protein | ||
| XAC_RS20830 | 4858635..4859369 | - | 735 | WP_015471424.1 | hypothetical protein | ||
| XAC_RS20835 | 4859777..4861804 | - | 2028 | WP_003487331.1 | hypothetical protein | ||
| XAC_RS20840 | 4862118..4862381 | + | 264 | WP_040107697.1 | hypothetical protein | ||
| XAC_RS20845 | 4862893..4864107 | + | 1215 | WP_011050083.1 | IS4-like element ISXac1 family transposase | ||
| XAC_RS25685 | 4864528..4865544 | - | 1017 | WP_011052759.1 | hypothetical protein | ||
| T6CP000219 | TssH | XAC_RS20850 (tssH) | 4865531..4868311 | - | 2781 | WP_011052760.1 | type VI secretion system ATPase TssH |
| T6CP000220 | TssG | XAC_RS20855 (tssG) | 4868367..4869407 | - | 1041 | WP_011052761.1 | type VI secretion system baseplate subunit TssG |
| T6CP000221 | TssF | XAC_RS20860 (tssF) | 4869371..4871254 | - | 1884 | WP_011052762.1 | type VI secretion system baseplate subunit TssF |
| T6CP000222 | TssE | XAC_RS20865 (tssE) | 4871259..4871762 | - | 504 | WP_003489896.1 | type VI secretion system baseplate subunit TssE |
| T6CP012701 | TagJ | XAC_RS20870 | 4871768..4872562 | - | 795 | WP_015463737.1 | hypothetical protein |
| T6CP000223 | TssD | XAC_RS20875 | 4872761..4873264 | - | 504 | WP_003489893.1 | type VI secretion system tube protein Hcp |
| T6CP000224 | TssC | XAC_RS20880 (tssC) | 4873345..4874838 | - | 1494 | WP_011052764.1 | type VI secretion system contractile sheath large subunit |
| T6CP000225 | TssB | XAC_RS20885 (tssB) | 4874842..4875351 | - | 510 | WP_011052765.1 | type VI secretion system contractile sheath small subunit |
| XAC_RS20890 | 4875665..4876336 | + | 672 | WP_011052766.1 | helix-turn-helix domain-containing protein | ||
| XAC_RS20895 | 4876433..4876879 | - | 447 | WP_011052767.1 | universal stress protein | ||
| XAC_RS20900 | 4877137..4877715 | - | 579 | WP_011052768.1 | sugar O-acetyltransferase | ||
| XAC_RS25805 | 4878033..4878232 | + | 200 | pseudogene | hypothetical protein | ||
| XAC_RS20905 (uvrD) | 4878411..4880597 | - | 2187 | WP_015463741.1 | DNA helicase II | ||
| XAC_RS20910 | 4880837..4882228 | - | 1392 | WP_011052770.1 | FAD/NAD(P)-binding protein | ||
| XAC_RS20920 (cls) | 4882485..4883903 | - | 1419 | WP_040107698.1 | cardiolipin synthase | ||
| XAC_RS20925 | 4883920..4885227 | - | 1308 | WP_003489877.1 | LysR family transcriptional regulator |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| REG0089 |
xac4129 (ecfK/RpoE,ECF σ factor) | protein | Unknown | Xanthomonas citri pv. citri str. 306 | chromosome (NC_003919) | 4850278..4850805 (+) | 489582896 | Unknown (↓) |
| REG0090 |
xac4127 (PknS) | protein | Unknown | Xanthomonas citri pv. citri str. 306 | chromosome (NC_003919) | 4846892..4849411 (-) | 505284326 | Unknown (↓) |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|