Detailed information of component protein
Summary
| Component ID | T6CP012701 |
| Component protein type | TagJ |
| T6SS ID (Type) | T6SS00028  (Type i3) |
| Strain | Xanthomonas axonopodis pv. citri str. 306 |
| Replicon | chromosome |
| Sequence | Protein sequence (265 a.a.); Nucleotide sequence (795 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | XAC_RS20870 |
| Coordinate (Strand) | 4871768..4872562 (-) |
| NCBI ID | WP_015463737.1 |
| RefSeq | NC_003919 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ImpE | PF07024.15 | 6.3e-38 | 140..259 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 265 a.a.
>T6CP012701 NC_003919:c4872562-4871768 [Xanthomonas citri pv. citri str. 306] [TagJ]
MDATAQTLLAQGEPAQALQQLIQQVRRQPADAAQRVFLFQLLAVLGQWSRAADQLRACGELDATTQPLVHTYLAVLQGEQ
TRAEVFAGKRLPRVMGEPAEWLAMHLQALQLAAQGHGEQAAALRAQAFERAPASAGVLNGERFQWLADADTRFGPCIELI
LDSGYAWAPLSQIQQLRMQAPLDLRDTVWAPVSVLWRNGGQAFGYLPVRYPGSEHLDAGELQLARRTEWTLVAQGEIGMG
QRMWSTESREIALLDVRDVQFDAG*
MDATAQTLLAQGEPAQALQQLIQQVRRQPADAAQRVFLFQLLAVLGQWSRAADQLRACGELDATTQPLVHTYLAVLQGEQ
TRAEVFAGKRLPRVMGEPAEWLAMHLQALQLAAQGHGEQAAALRAQAFERAPASAGVLNGERFQWLADADTRFGPCIELI
LDSGYAWAPLSQIQQLRMQAPLDLRDTVWAPVSVLWRNGGQAFGYLPVRYPGSEHLDAGELQLARRTEWTLVAQGEIGMG
QRMWSTESREIALLDVRDVQFDAG*
Nucleotide sequence: 795 bp
>T6CP012701 NC_003919:c4872562-4871768 [Xanthomonas citri pv. citri str. 306] [TagJ]
ATGGATGCCACCGCACAGACCCTGCTTGCCCAAGGCGAGCCGGCGCAGGCGTTGCAGCAACTGATCCAGCAGGTGCGCCG
GCAACCGGCCGATGCAGCGCAGCGCGTGTTTCTGTTTCAGTTGCTGGCCGTCCTCGGCCAGTGGTCGCGCGCCGCAGATC
AGCTGCGTGCTTGCGGTGAACTGGATGCCACCACGCAGCCCTTGGTCCACACCTATCTGGCGGTATTGCAGGGCGAGCAG
ACGCGCGCCGAGGTGTTTGCCGGTAAGCGGTTACCGCGCGTGATGGGTGAGCCGGCCGAGTGGCTGGCAATGCATCTGCA
GGCGCTGCAACTGGCGGCGCAAGGGCATGGCGAACAAGCAGCGGCGTTGCGGGCGCAGGCCTTCGAACGGGCACCAGCCA
GTGCCGGCGTGCTCAATGGCGAACGCTTCCAATGGCTCGCAGATGCCGACACCCGTTTCGGGCCCTGTATCGAGCTCATT
CTCGATAGCGGCTATGCATGGGCCCCGCTCAGCCAGATCCAGCAGCTGCGCATGCAGGCGCCGCTGGATCTGCGCGACAC
CGTGTGGGCGCCGGTGAGCGTGCTGTGGCGCAACGGCGGCCAGGCCTTCGGCTACTTGCCGGTACGTTACCCCGGCAGCG
AGCACCTGGATGCCGGCGAGCTGCAACTGGCGCGCCGCACCGAATGGACCCTTGTCGCACAAGGCGAGATCGGCATGGGC
CAGCGCATGTGGAGCACCGAGTCGCGCGAGATTGCGCTGCTGGATGTGCGCGATGTGCAGTTCGACGCGGGCTGA
ATGGATGCCACCGCACAGACCCTGCTTGCCCAAGGCGAGCCGGCGCAGGCGTTGCAGCAACTGATCCAGCAGGTGCGCCG
GCAACCGGCCGATGCAGCGCAGCGCGTGTTTCTGTTTCAGTTGCTGGCCGTCCTCGGCCAGTGGTCGCGCGCCGCAGATC
AGCTGCGTGCTTGCGGTGAACTGGATGCCACCACGCAGCCCTTGGTCCACACCTATCTGGCGGTATTGCAGGGCGAGCAG
ACGCGCGCCGAGGTGTTTGCCGGTAAGCGGTTACCGCGCGTGATGGGTGAGCCGGCCGAGTGGCTGGCAATGCATCTGCA
GGCGCTGCAACTGGCGGCGCAAGGGCATGGCGAACAAGCAGCGGCGTTGCGGGCGCAGGCCTTCGAACGGGCACCAGCCA
GTGCCGGCGTGCTCAATGGCGAACGCTTCCAATGGCTCGCAGATGCCGACACCCGTTTCGGGCCCTGTATCGAGCTCATT
CTCGATAGCGGCTATGCATGGGCCCCGCTCAGCCAGATCCAGCAGCTGCGCATGCAGGCGCCGCTGGATCTGCGCGACAC
CGTGTGGGCGCCGGTGAGCGTGCTGTGGCGCAACGGCGGCCAGGCCTTCGGCTACTTGCCGGTACGTTACCCCGGCAGCG
AGCACCTGGATGCCGGCGAGCTGCAACTGGCGCGCCGCACCGAATGGACCCTTGTCGCACAAGGCGAGATCGGCATGGGC
CAGCGCATGTGGAGCACCGAGTCGCGCGAGATTGCGCTGCTGGATGTGCGCGATGTGCAGTTCGACGCGGGCTGA