Detailed information of component protein


Summary

Component ID T6CP000221
Component protein type TssF
T6SS ID (Type) T6SS00028 insolico (Type i3)
Strain Xanthomonas axonopodis pv. citri str. 306
Replicon chromosome
Sequence Protein sequence (628 a.a.); Nucleotide sequence (1884 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) XAC_RS20860
Coordinate (Strand) 4869371..4871254 (-)
NCBI ID WP_011052762.1
RefSeq NC_003919
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 4.6e-231 1..624
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 628 a.a.    

>T6CP000221 NC_003919:c4871254-4869371 [Xanthomonas citri pv. citri str. 306] [TssF]
MDPRLLPYYTRELQHVRDMGAEFAREYPKIAGRLGLDAFECADPYVERLLEGFAFLAARVQLKLDAQYPVFTQHLLEMVY
PHYLAPLPSMAVVQLQPDLKDSGLAAGVVVSRQSALRSLVGPGERTACEFRTAHPVTLWPLQLAEAKYLESPAALAAAGI
ALPPGRVVRAGVRLRFELVGGAQTHALALDRLPLFLAGADGLPKRLYEQLHADTTAVVVRGSDARGGTLEVTLDADAVQM
RGFADDDALIPYDGRSFSGYRLLQEYFACPERFLFAELAGLRAPLRRLHGSSFEVVVLLQRSLPSLAAAVDAEHFKLFCT
PAINLFPRRADRIHLQAGLHEYHVLADRTRPMDFEIHHLGEVEGFGDRQEPEQCFTAFYGGDARTWHARHGAFYSMRREP
RMLSARQRRDGARSSYVGSEVFVSLVDADDQAHSTRLRQLGLQLWCSNRDLPLHMPVGKGASDFTMDSGVPVRSVRCVAG
PTKPRPALSDGQTAWRLLSQLQLNYLSLFEDGPDGAAALREILALYCDPFDASAQRQIEGVKQVSGTPIVRRIPVPGPIT
FGRGLEITLTCEDAAFEGTGAFLLASVLRHFFARYVSVNSFTETVLRTTERNEVARWPAQPGTRPRL*

  Nucleotide sequence: 1884 bp    

>T6CP000221 NC_003919:c4871254-4869371 [Xanthomonas citri pv. citri str. 306] [TssF]
ATGGACCCGCGCCTACTGCCGTACTACACCCGCGAGTTGCAGCACGTGCGCGACATGGGCGCGGAGTTTGCGCGCGAGTA
TCCCAAGATCGCCGGCCGGCTTGGCCTGGACGCGTTCGAATGCGCCGACCCCTATGTCGAGCGGCTGCTGGAAGGCTTCG
CGTTTCTGGCCGCGCGCGTGCAACTCAAGCTGGACGCGCAGTACCCGGTGTTCACCCAGCACCTGCTGGAGATGGTCTAC
CCGCATTATCTGGCGCCGCTGCCGTCGATGGCGGTGGTGCAGTTGCAGCCGGATCTGAAAGACAGCGGGCTGGCAGCAGG
CGTCGTCGTGTCGCGGCAAAGCGCGCTGCGCAGCCTGGTCGGCCCCGGCGAGCGCACCGCCTGCGAATTCCGCACCGCGC
ATCCGGTGACCTTGTGGCCGTTGCAACTGGCCGAGGCCAAGTATCTGGAATCGCCAGCCGCCTTGGCCGCTGCCGGCATC
GCTTTGCCGCCCGGGCGCGTGGTGCGTGCCGGCGTGCGGCTGCGCTTCGAGCTGGTGGGTGGTGCGCAGACGCACGCGCT
GGCGCTGGATCGGCTGCCGCTGTTTCTGGCCGGCGCCGACGGCCTGCCCAAGCGGTTGTACGAACAACTGCATGCCGATA
CCACCGCCGTGGTGGTGCGTGGCAGCGATGCCCGCGGTGGCACGCTGGAGGTGACGCTGGACGCCGATGCCGTGCAGATG
CGCGGCTTTGCCGACGACGATGCATTGATTCCGTACGACGGCCGTTCGTTCAGTGGCTATCGCCTGCTGCAGGAGTATTT
CGCCTGCCCGGAGCGCTTTTTGTTCGCAGAGCTCGCCGGGCTGCGCGCGCCATTGCGGCGGTTGCACGGCAGCAGCTTCG
AGGTGGTGGTGTTGCTGCAACGCAGCCTGCCCAGCCTGGCTGCGGCAGTAGACGCCGAGCACTTCAAATTGTTCTGCACC
CCGGCGATCAATCTGTTCCCGCGCCGCGCCGATCGCATCCATCTGCAGGCCGGGTTGCACGAGTACCACGTGCTGGCCGA
CCGCACCCGGCCGATGGATTTCGAGATCCATCACCTGGGCGAGGTCGAAGGCTTCGGCGATCGTCAGGAGCCCGAGCAAT
GCTTCACCGCGTTCTATGGTGGCGACGCACGCACCTGGCATGCACGGCATGGCGCGTTCTACAGCATGCGCCGTGAACCG
CGCATGCTATCGGCACGTCAGCGCCGCGATGGCGCGCGGTCGAGCTATGTGGGCAGCGAAGTCTTCGTCAGCCTGGTCGA
TGCCGACGATCAGGCCCACAGCACGCGCCTGCGTCAGCTTGGGCTGCAACTGTGGTGCAGCAACCGCGATCTGCCGCTGC
ATATGCCGGTAGGCAAGGGCGCAAGCGACTTCACCATGGACAGCGGCGTGCCGGTACGGAGCGTGCGCTGCGTGGCCGGG
CCGACCAAGCCGCGCCCGGCATTGTCGGATGGGCAGACTGCGTGGCGCCTGCTCAGTCAATTGCAGCTCAATTATCTGTC
GCTGTTCGAAGATGGCCCCGACGGCGCCGCTGCGCTACGCGAGATCCTCGCCCTGTATTGCGACCCGTTCGACGCGTCCG
CGCAGCGGCAGATCGAAGGCGTCAAGCAGGTGAGCGGCACACCGATCGTGCGGCGCATTCCGGTGCCGGGTCCGATCACC
TTCGGCCGCGGCCTGGAGATCACGCTGACCTGCGAGGACGCCGCCTTCGAAGGCACTGGCGCCTTCCTGCTGGCTTCGGT
GCTGCGGCACTTCTTCGCGCGCTATGTCTCGGTGAATTCCTTTACCGAAACCGTGCTGCGTACCACCGAACGCAACGAGG
TGGCCCGGTGGCCAGCCCAGCCCGGCACGCGCCCGCGCCTGTGA