Detailed information of regulator


Summary

Regulator ID REG0090 experimental
Regulator type protein
Regulatory pathway (from literatures) Unknown
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00028 insolico (Type i3)
Strain Xanthomonas citri pv. citri str. 306
Replicon chromosome
Sequence Protein sequence (840 a.a.); Nucleotide sequence (2520 bp)
Description RpoE are required and essential for T6SS-dependent resistance to Dictyostelium predation.
Reference
External database links

Locus tag (Gene) xac4127 (PknS)
Coordinates (Strand) 4846892..4849411 (-)
NCBI ID 505284326
RefSeq NC_003919
Uniprot ID UPI0002C3E575
KEGG ID -
KEGG pathway (determined by BlastKOALA) -
PDB ID -
  Target
Target Regulation (↓/↑) Target sequence
Unknown ↓ -
Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
Pkinase PF00069.27 2.7e-35 93..299
TPR_12 PF13424.8 4.3e-09 732..800
TPR_10 PF13374.8 7.2e-06 691..723
TPR_12 PF13424.8 9.6e-05 480..546
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-839 VAGGAAVSLAATAWQRLEALFHRACQLPAAEREAFARAQAGDDASLRDDLLAMLAVESQATLRVRAPLKQAVAALRAPLPELPAGTRFGAWAIDRLIGAGGMGQVYLGHRADGAYEREVAIKLVAADALDAQGRALFEFECRLLAQMVHPAIAQIHDVGTDAHGQPYLVMEYLRGEPITWWCDEHRLSLHARVLLMLRVGEAVQHAHQKGVIHRDLKPSNVLVSEIDGRPMPGVIDFGIAVDATNPGMTYAHDRGTPGYMSPEQARGAQDVDARSDIYALGAMFYELSCGLAPVAGRDGVPQPPSQRVAAVPADARARICAARATTYQKLHEQLRDGLDAIVLRALEPQPGARYASVSALLDDLHRWLDGYPPRALQASRWLRLRKFTQRHRSGVAAAGLAAIAVVAGLGATLWSLQQAARDAQRAQVTGDFMSSVLSSVDPGVARDLDKTLMLRVMQQASQRAARELADQPDARTQVELTLGRTLIALANFPQAVEHLRIAQTLAQQTAGAGSLPALKAASMLGQALTGDGKPGDAERVLRQGIAQAARGDAQQQAMGNELRAWLAWALREQGRMRDALAESRHAYVAALANASSSADQRIDAGNSYAAMLADNGQLVPAIALQRSLLRERMAMRGPEHPLVVSMRNSLAVFLLMQRDFAGAEAELVPLLRVTRTLYGESAADTLMIEGNLAGALRQQGKVAEAGPYYRRALERARAAFGNDAPVTIAYRSNHAFWLLDDGQVDASLAEQRAALTASERVLGRAHPQTAEILRGMSEAERRLGQTVAARDHARQALQILTGIFGDADAPLRAARQTLASATPPADSREAEATTAVAQR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8578 - -


  Protein sequence of regulator: 840 a.a.    .

>REG0090 NC_003919:c4849411-4846892 [Xanthomonas citri pv. citri str. 306]
VAGGAAVSLAATAWQRLEALFHRACQLPAAEREAFARAQAGDDASLRDDLLAMLAVESQATLRVRAPLKQAVAALRAPLP
ELPAGTRFGAWAIDRLIGAGGMGQVYLGHRADGAYEREVAIKLVAADALDAQGRALFEFECRLLAQMVHPAIAQIHDVGT
DAHGQPYLVMEYLRGEPITWWCDEHRLSLHARVLLMLRVGEAVQHAHQKGVIHRDLKPSNVLVSEIDGRPMPGVIDFGIA
VDATNPGMTYAHDRGTPGYMSPEQARGAQDVDARSDIYALGAMFYELSCGLAPVAGRDGVPQPPSQRVAAVPADARARIC
AARATTYQKLHEQLRDGLDAIVLRALEPQPGARYASVSALLDDLHRWLDGYPPRALQASRWLRLRKFTQRHRSGVAAAGL
AAIAVVAGLGATLWSLQQAARDAQRAQVTGDFMSSVLSSVDPGVARDLDKTLMLRVMQQASQRAARELADQPDARTQVEL
TLGRTLIALANFPQAVEHLRIAQTLAQQTAGAGSLPALKAASMLGQALTGDGKPGDAERVLRQGIAQAARGDAQQQAMGN
ELRAWLAWALREQGRMRDALAESRHAYVAALANASSSADQRIDAGNSYAAMLADNGQLVPAIALQRSLLRERMAMRGPEH
PLVVSMRNSLAVFLLMQRDFAGAEAELVPLLRVTRTLYGESAADTLMIEGNLAGALRQQGKVAEAGPYYRRALERARAAF
GNDAPVTIAYRSNHAFWLLDDGQVDASLAEQRAALTASERVLGRAHPQTAEILRGMSEAERRLGQTVAARDHARQALQIL
TGIFGDADAPLRAARQTLASATPPADSREAEATTAVAQR*

  Nucleotide sequence of regulator: 2520 bp    .

>REG0090 NC_003919:c4849411-4846892 [Xanthomonas citri pv. citri str. 306]
GTGGCTGGCGGCGCAGCTGTGAGCCTGGCGGCCACCGCGTGGCAACGTTTGGAAGCCTTGTTTCATCGGGCCTGCCAGCT
GCCTGCGGCTGAGCGCGAGGCATTCGCGCGCGCGCAGGCCGGCGACGACGCCAGCTTGCGCGACGACCTGCTGGCGATGC
TGGCGGTGGAATCGCAGGCCACCTTGCGCGTGCGGGCGCCATTGAAGCAGGCCGTCGCCGCATTGCGCGCGCCATTACCG
GAACTGCCGGCCGGCACACGCTTCGGTGCGTGGGCGATCGACCGCCTGATCGGCGCTGGCGGCATGGGCCAGGTGTATCT
GGGCCACCGTGCCGATGGCGCGTACGAGCGCGAGGTGGCGATCAAGCTGGTGGCTGCCGATGCGCTGGATGCGCAGGGCC
GTGCACTGTTCGAATTCGAGTGCCGGCTGCTGGCGCAGATGGTGCACCCGGCGATCGCGCAGATACACGACGTGGGCACC
GATGCCCACGGCCAGCCGTACCTGGTGATGGAATACCTGCGCGGCGAGCCGATCACCTGGTGGTGCGACGAACACCGCCT
GTCGCTGCATGCGCGCGTATTGCTGATGCTGCGTGTCGGCGAGGCAGTCCAGCACGCGCATCAGAAGGGCGTGATCCATC
GCGACCTCAAACCCAGCAACGTGCTGGTCAGCGAGATCGACGGGCGGCCGATGCCAGGGGTGATCGACTTCGGCATCGCC
GTCGATGCGACCAACCCGGGCATGACCTACGCGCATGATCGCGGCACGCCGGGCTACATGAGCCCGGAACAGGCACGCGG
CGCGCAGGATGTGGACGCACGCAGCGATATCTATGCGCTGGGAGCGATGTTCTACGAATTGAGTTGCGGGCTGGCGCCAG
TGGCCGGACGCGACGGGGTGCCGCAGCCGCCGTCGCAGCGGGTGGCAGCAGTGCCGGCCGATGCGCGTGCGCGCATCTGC
GCGGCGCGCGCGACTACCTACCAAAAACTACACGAGCAACTGCGCGACGGGCTGGATGCGATCGTGCTGCGCGCCCTGGA
ACCGCAACCGGGTGCGCGCTACGCATCGGTATCTGCGCTGCTGGACGATCTGCATCGCTGGCTGGACGGTTACCCGCCGC
GCGCCCTGCAGGCGAGCCGCTGGCTGCGGCTGCGCAAATTCACCCAGCGTCATCGCAGCGGCGTCGCCGCCGCCGGCCTG
GCTGCGATCGCCGTGGTCGCCGGCCTGGGTGCCACGCTGTGGTCGCTGCAACAGGCCGCGCGCGATGCCCAACGCGCGCA
GGTCACCGGCGATTTCATGAGTTCGGTGTTGTCCAGCGTGGACCCTGGTGTGGCGCGCGACCTGGACAAGACCCTGATGC
TGCGCGTGATGCAGCAGGCCTCGCAGCGTGCGGCGCGCGAGCTGGCCGACCAGCCCGATGCGCGCACCCAGGTGGAACTG
ACGCTGGGCCGCACGCTCATTGCGCTGGCTAATTTCCCGCAGGCCGTGGAGCATCTGCGCATCGCACAGACCCTGGCGCA
GCAGACCGCCGGCGCGGGCAGCCTGCCGGCGTTGAAGGCCGCTTCCATGCTGGGACAGGCGCTCACCGGTGACGGCAAAC
CCGGCGACGCCGAGCGTGTCTTGCGCCAGGGCATTGCACAGGCAGCACGCGGCGATGCGCAACAGCAGGCCATGGGCAAC
GAGCTGCGTGCGTGGTTGGCGTGGGCCCTGCGCGAACAGGGCCGCATGCGCGATGCGTTGGCAGAGAGCCGGCATGCCTA
TGTCGCTGCGCTGGCCAATGCCTCCAGCAGCGCGGACCAGCGTATCGACGCCGGCAACAGCTACGCCGCCATGCTGGCCG
ATAACGGCCAGCTGGTACCGGCGATCGCCTTGCAGCGCAGCCTGTTGCGCGAGCGCATGGCCATGCGCGGGCCCGAGCAT
CCACTGGTGGTGTCGATGCGCAACAGCCTGGCAGTGTTCCTGCTGATGCAGCGCGACTTTGCCGGTGCCGAAGCCGAACT
CGTCCCGCTGCTGCGGGTCACACGCACGTTGTATGGCGAGAGCGCCGCCGACACCTTGATGATCGAAGGCAACCTGGCCG
GCGCGTTGCGGCAGCAGGGCAAGGTGGCCGAAGCCGGGCCGTACTACCGCAGGGCGCTGGAGCGCGCGCGCGCGGCCTTC
GGCAACGATGCACCGGTCACCATCGCCTATCGCAGCAACCATGCGTTCTGGCTGCTGGACGACGGCCAGGTGGACGCGTC
GCTGGCCGAACAGCGCGCCGCGCTCACCGCATCGGAGCGTGTGCTGGGGCGCGCGCATCCGCAAACGGCCGAGATCCTGC
GCGGCATGTCCGAAGCCGAGCGCAGGCTGGGACAGACCGTGGCGGCGCGCGATCATGCACGGCAGGCGTTGCAGATTCTT
ACCGGCATTTTCGGCGATGCAGACGCGCCACTGCGCGCCGCGCGCCAGACCCTGGCATCGGCGACGCCGCCGGCCGACAG
CCGTGAGGCAGAGGCCACTACCGCGGTGGCGCAGCGCTGA