Detailed information of component protein


Summary

Component ID T6CP000219
Component protein type TssH
T6SS ID (Type) T6SS00028 insolico (Type i3)
Strain Xanthomonas axonopodis pv. citri str. 306
Replicon chromosome
Sequence Protein sequence (927 a.a.); Nucleotide sequence (2781 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) XAC_RS20850
Coordinate (Strand) 4865531..4868311 (-)
NCBI ID WP_011052760.1
RefSeq NC_003919
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 8.4e-40 646..812
AAA_lid_9 PF17871.3 1.6e-28 376..467
ClpB_D2-small PF10431.11 1.9e-11 819..890
AAA PF00004.31 3e-08 236..347
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 927 a.a.    

>T6CP000219 NC_003919:c4868311-4865531 [Xanthomonas citri pv. citri str. 306] [TssH]
MAEISRSSLFGKLNPLAYRGIESATVFCKLRGNPYVELVHWLHQLLQLQDSDLHRIIRHFQLNPSTLARDVTAALDGLPR
GSTAVTDLSANVEEAVERGWVYASLGFGEAQVRTGYLVVGMLSVRGLRHALLAISKEFDKLKPAVLNERFAEIVAGSPED
GLLPSDGFSLGQAAAPGETSGAIAPAALGKQEALKKFTTDLTAQAREGKLDPIIGRDDEIRQVVDILMRRRQNNPILVGE
AGVGKTAVVEGFAQRIARGDVPPALKDVQLRALDVGLLQAGASMKGEFEQRLRAVIDEVQASPKPIILFVDETHTLIGAG
GAAGTGDAANLLKPALARGTLRTVGATTFAEYKKYIEKDPALTRRFQAVQVDEPDESKAVRMMRGVASMMEQHHRVQILD
EALEAAVKLSHRYIPARQLPDKSVSLLDTACARVAVSLHATPAEVDDSRRRIESLDTEQAIIERERAIGIVVEERAAACA
GLLESEHGRLQALEQRWVAEKALVDELLSLRAQLRSDNAPVEGTGSALEAEADTAQAASGDIAVLDAPVQVDRDTLLARL
QLVQAGLGALQGESPLILPTVDHQAVAAVVADWTGIPVGRMARDEIDTVLRLPELLAKRVIGQDHAMEMIAKRIQTSRAG
LDNPDKPIGVFLLAGTSGVGKTETALALAETLYGGEQNLITINMSEYQEAHTVSSLKGAPPGYVGYGEGGVLTEAVRRKP
YSVVLLDEVEKAHPDVHELFFQVFDKGWMEDGEGRRIDFRNTLIILTSNAGTDLIASLCKDPDLMPDPEGMAKAIREPLL
KVFPPALLGRLVAIPYYPLSNAMLGQIVRLQLNRIKTRIEERYKIPFDYDDSVVELVISRCTESESGGRMIDAILTNSVL
PEISREFLERVNSGDPVLRIELGACDRSFVYDFLKNRHQETKNGNL*

  Nucleotide sequence: 2781 bp    

>T6CP000219 NC_003919:c4868311-4865531 [Xanthomonas citri pv. citri str. 306] [TssH]
ATGGCCGAGATCTCCCGCAGCTCCCTGTTCGGCAAGCTCAATCCGCTGGCCTACCGCGGCATCGAAAGCGCCACCGTGTT
CTGCAAGCTGCGCGGCAACCCGTATGTGGAATTGGTGCATTGGCTGCATCAGTTGCTGCAGCTGCAGGACTCGGACCTGC
ACCGCATCATCAGGCACTTTCAGCTCAACCCGTCCACGCTTGCGCGCGATGTCACCGCCGCGCTGGATGGCTTGCCGCGC
GGCTCCACTGCCGTGACCGATCTATCGGCCAATGTCGAAGAAGCGGTGGAGCGCGGTTGGGTGTACGCCTCACTCGGTTT
TGGTGAAGCGCAAGTACGCACCGGCTATCTGGTGGTCGGTATGTTGAGCGTGCGTGGCTTGCGTCATGCGTTGCTGGCGA
TCTCCAAGGAGTTCGACAAGCTCAAGCCCGCAGTGCTCAACGAGCGCTTCGCCGAGATCGTGGCCGGCTCGCCGGAAGAT
GGCTTGCTGCCCAGCGATGGATTTTCGCTTGGTCAGGCCGCTGCACCCGGGGAGACCAGCGGTGCCATCGCGCCTGCCGC
ACTCGGCAAGCAGGAAGCGCTGAAGAAATTCACCACCGACCTCACCGCCCAGGCGCGCGAAGGCAAGCTGGACCCGATCA
TCGGCCGCGACGACGAGATCCGCCAGGTGGTCGACATCCTGATGCGCCGCCGCCAGAACAACCCGATCCTGGTCGGCGAA
GCCGGCGTCGGCAAGACCGCGGTGGTGGAAGGGTTCGCGCAGCGCATCGCGCGCGGCGACGTGCCGCCGGCGTTGAAGGA
TGTGCAACTGCGCGCGCTGGATGTCGGCTTGCTGCAGGCCGGCGCCAGCATGAAGGGCGAGTTCGAACAGCGTCTGCGCG
CGGTGATCGACGAGGTGCAGGCCAGCCCCAAGCCGATCATTTTGTTCGTCGACGAAACCCACACCCTCATCGGCGCCGGT
GGTGCCGCAGGCACCGGCGATGCGGCGAACCTGCTCAAGCCGGCACTGGCGCGCGGCACGCTGCGCACGGTGGGCGCGAC
CACGTTTGCCGAATACAAGAAATACATCGAAAAGGACCCCGCGCTGACGCGGCGCTTCCAGGCCGTGCAGGTGGACGAAC
CGGACGAGTCCAAGGCCGTGCGCATGATGCGCGGCGTCGCTTCGATGATGGAACAGCATCACCGCGTGCAGATCCTCGAC
GAAGCGCTGGAAGCGGCGGTCAAGCTCAGCCACCGCTACATCCCTGCGCGGCAGCTGCCGGACAAGTCGGTGAGCCTGCT
GGACACGGCCTGCGCGCGCGTGGCGGTGAGCCTGCATGCCACGCCTGCGGAAGTGGACGACAGCCGCCGACGCATCGAAT
CGCTGGACACCGAGCAGGCGATCATCGAGCGCGAGCGTGCGATCGGCATCGTGGTGGAGGAGCGTGCCGCTGCGTGTGCT
GGCCTGCTGGAAAGCGAGCACGGCCGCCTGCAGGCGTTGGAACAGCGTTGGGTTGCAGAAAAGGCATTGGTCGACGAGCT
GTTGTCGCTGCGCGCGCAATTGCGCAGTGACAATGCGCCCGTAGAAGGCACTGGCAGCGCACTGGAAGCAGAGGCCGATA
CCGCGCAGGCAGCGTCTGGCGACATCGCCGTGCTCGACGCACCGGTGCAGGTTGATCGCGACACGCTGCTGGCGCGCCTG
CAATTGGTGCAGGCGGGACTAGGCGCGCTCCAAGGCGAATCGCCTCTGATCCTGCCCACTGTCGATCATCAGGCCGTTGC
TGCCGTCGTCGCCGACTGGACCGGCATCCCGGTCGGGCGCATGGCGCGCGACGAGATCGACACCGTGCTGCGCCTGCCCG
AACTGCTGGCCAAGCGCGTGATCGGCCAGGATCACGCCATGGAGATGATCGCCAAGCGCATCCAGACCAGCCGCGCCGGC
CTGGACAACCCGGACAAACCGATCGGCGTGTTCCTGCTGGCCGGCACCTCCGGCGTGGGCAAGACCGAAACCGCGCTCGC
CTTGGCCGAAACGCTGTACGGCGGCGAACAGAACCTGATCACCATCAACATGAGCGAGTACCAGGAGGCGCACACCGTCT
CCTCGCTCAAGGGCGCACCACCGGGCTACGTGGGCTACGGCGAAGGCGGCGTGCTGACCGAAGCGGTGCGACGCAAGCCG
TACTCAGTGGTGCTGCTGGATGAAGTGGAGAAGGCCCACCCGGACGTCCACGAACTGTTCTTCCAGGTCTTCGACAAGGG
CTGGATGGAAGACGGCGAAGGCCGCCGCATCGACTTCCGCAACACCCTCATCATCCTCACCAGCAACGCCGGCACCGACC
TGATCGCCAGCCTGTGCAAGGACCCGGACCTGATGCCCGACCCGGAAGGCATGGCCAAGGCCATCCGCGAGCCGTTGTTG
AAGGTGTTTCCGCCGGCATTGCTCGGACGGCTGGTCGCGATTCCGTATTACCCGCTCAGTAACGCCATGCTCGGACAGAT
CGTGCGACTGCAGTTGAACCGCATCAAGACGCGCATCGAAGAGCGCTACAAGATTCCATTCGACTACGACGACTCGGTGG
TGGAGCTAGTGATCTCGCGATGCACCGAGAGTGAATCGGGCGGACGGATGATCGATGCGATTTTGACTAACTCGGTGTTG
CCGGAGATCAGTCGGGAGTTTCTGGAACGCGTGAATAGTGGTGATCCGGTTTTGCGGATCGAACTGGGTGCTTGCGACAG
AAGCTTCGTTTACGACTTCCTAAAAAATAGGCATCAGGAGACTAAGAATGGCAACCTATGA