SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000220
Component protein type	TssG
T6SS ID (Type)	T6SS00028 (Type i3)
Strain	Xanthomonas axonopodis pv. citri str. 306
Replicon	chromosome
Sequence	Protein sequence (347 a.a.); Nucleotide sequence (1041 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	XAC_RS20855
Coordinate (Strand)	4868367..4869407 (-)
NCBI ID	WP_011052761.1
RefSeq	NC_003919
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	5.9e-98	27..328

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 347 a.a.

						>T6CP000220 NC_003919:c4869407-4868367 [Xanthomonas citri pv. citri str. 306] [TssG]
VASPARHAPAPVSAAAAALAQALQTRPQDFSPFAALRAIERCHPQQPRLGESARASDDVLRLRHAPSLAFAPHALHRYTP
ATHDQPAALYGVFFGLFGPNAPLPLHLTEYAIERAQQAKDGTFAAFADVFHHRMLSLFYRAWAQAQPSVQAERPASDQFR
AWLDALVGIASPHLRQRDALPDDARRYYAGRLGTATRTPEGLRALLQQLFEWPVQVQEFIAEWMRLPADAHLQLGLGPRN
ARLGVDSVVGAHVRGAQQRVRIRLGPLPRLAFQRFLPGGQALKQLTATVRSYLGDEFGWELQLSLKADEVPTPHLARNSR
LGLDTWLGRRAWSIADADDVVLHPSG*					

Nucleotide sequence: 1041 bp

						>T6CP000220 NC_003919:c4869407-4868367 [Xanthomonas citri pv. citri str. 306] [TssG]
GTGGCCAGCCCAGCCCGGCACGCGCCCGCGCCTGTGAGCGCCGCGGCTGCCGCGCTGGCACAGGCGCTGCAGACCCGGCC
ACAGGATTTCAGCCCATTCGCGGCCTTGCGCGCGATCGAACGCTGCCATCCGCAGCAGCCGCGCCTGGGCGAATCGGCGC
GCGCCAGCGACGATGTGCTGCGGCTGCGGCATGCGCCGTCACTGGCATTCGCACCCCATGCGCTGCACCGCTACACACCG
GCAACGCACGATCAGCCTGCCGCGCTGTATGGCGTGTTTTTCGGTCTTTTCGGGCCAAACGCGCCGTTGCCGTTGCACCT
GACCGAATACGCCATCGAGCGTGCGCAGCAAGCCAAGGACGGCACCTTCGCCGCGTTTGCCGATGTGTTCCACCACCGCA
TGCTGAGCCTGTTCTACCGCGCCTGGGCGCAGGCACAGCCCAGCGTGCAGGCCGAGCGCCCGGCGAGCGACCAGTTCCGT
GCGTGGCTGGATGCATTGGTGGGCATCGCCAGCCCGCACCTGCGCCAACGCGATGCATTGCCGGACGATGCACGTCGTTA
CTACGCCGGCCGTCTTGGCACCGCCACACGCACGCCGGAAGGCTTGCGTGCCCTGCTGCAACAGTTGTTCGAATGGCCGG
TGCAGGTACAGGAATTCATCGCCGAATGGATGCGCCTGCCGGCCGATGCGCACCTGCAACTTGGTTTGGGTCCGCGCAAC
GCGCGGCTGGGCGTGGACAGCGTGGTGGGCGCACACGTGCGTGGCGCCCAGCAACGCGTGCGCATCCGCCTGGGGCCGCT
GCCGCGCCTGGCGTTTCAACGCTTTCTGCCGGGTGGCCAGGCGCTGAAGCAACTCACCGCCACGGTGCGCAGCTATCTGG
GCGACGAATTCGGCTGGGAACTGCAGCTGTCGCTCAAGGCCGACGAGGTCCCTACGCCGCACCTGGCGCGCAATAGCCGG
CTGGGCCTGGACACCTGGCTGGGCCGCCGCGCCTGGAGCATTGCCGATGCCGACGACGTGGTGCTGCACCCCTCCGGGTG
A					